Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s29.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5768.75 43243.37
2. ckma ENSDARG00000035327, ENSDARG00000114671 3605.47 27027.11 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
3. ckmb ENSDARG00000040565 3605.47 27027.11 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. mt-co2 ENSDARG00000063908 3605.47 27027.11 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd4 ENSDARG00000063917 3605.47 27027.11 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. pvalb1 ENSDARG00000037789 3605.47 27027.11 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
7. tpma ENSDARG00000033683 3605.47 27027.11 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. actb2 ENSDARG00000037870 2163.28 16216.25 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2163.28 16216.25 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
10. tmsb4x ENSDARG00000077777 2163.28 16216.25 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. tnnc2 ENSDARG00000070835, ENSDARG00000111155 2163.28 16216.25 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
12. ATP5B 1442.19 10810.86 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
13. BX511252.1 BX511252.1 1442.19 10810.86
14. apoa2 ENSDARG00000015866 1442.19 10810.86 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
15. atp5g3b 1442.19 10810.86 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
16. col1a1b ENSDARG00000035809 1442.19 10810.86 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
17. eef1g ENSDARG00000056119 1442.19 10810.86 eukaryotic translation elongation factor 1 gamma [Source:ZFIN;Acc:ZDB-GENE-020423-3]
18. krt4 ENSDARG00000017624, ENSDARG00000115790 1442.19 10810.86 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
19. marcksl1b ENSDARG00000035715 1442.19 10810.86 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
20. mt-co3 ENSDARG00000063912 1442.19 10810.86 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. mt-nd1 ENSDARG00000063895 1442.19 10810.86 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. mt-nd2 ENSDARG00000063899 1442.19 10810.86 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
23. si:dkeyp-113d7.4 si:dkeyp-113d7.4 1442.19 10810.86
24. AL929007.1 AL929007.1 721.09 5405.39
25. AL954137.2 ENSDARG00000114408 721.09 5405.39
26. CRELD1 721.09 5405.39 cysteine rich with EGF like domains 1
27. IGFN1 IGFN1 721.09 5405.39
28. MAST1_1 MAST1_1 721.09 5405.39
29. MYOM2_1 MYOM2_1 721.09 5405.39
30. PLCXD1_4 PLCXD1_4 721.09 5405.39
31. RPS17L RPS17L 721.09 5405.39
32. TMEM45A ENSDARG00000070743 721.09 5405.39 transmembrane protein 45a [Source:ZFIN;Acc:ZDB-GENE-050522-34]
33. TUB ENSDARG00000062165, ENSDARG00000111083 721.09 5405.39 tubby bipartite transcription factor [Source:ZFIN;Acc:ZDB-GENE-121009-1]
34. acta1b ENSDARG00000055618 721.09 5405.39 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 721.09 5405.39 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. aldh9a1b ENSDARG00000037061 721.09 5405.39 aldehyde dehydrogenase 9 family, member A1b [Source:ZFIN;Acc:ZDB-GENE-040120-5]
37. ank1 ank1 721.09 5405.39
38. ap2s1 ENSDARG00000026967 721.09 5405.39 adaptor related protein complex 2 subunit sigma 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2174]
39. ap3m1 ENSDARG00000029928 721.09 5405.39 adaptor related protein complex 3 subunit mu 1 [Source:ZFIN;Acc:ZDB-GENE-021015-2]
40. apoa1b ENSDARG00000101324 721.09 5405.39 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
41. apoa4 apoa4 721.09 5405.39
42. apoc1l apoc1l 721.09 5405.39
43. apoc2 ENSDARG00000092155 721.09 5405.39 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
44. arl8a ENSDARG00000078686 721.09 5405.39 ADP-ribosylation factor-like 8A [Source:ZFIN;Acc:ZDB-GENE-030131-5025]
45. atp5l ENSDARG00000011841 721.09 5405.39 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g [Source:ZFIN;Acc:ZDB-GENE-030131-5177]
46. btg1 ENSDARG00000027249 721.09 5405.39 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
47. calb2b ENSDARG00000036344 721.09 5405.39 calbindin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1668]
48. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 721.09 5405.39 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
49. casq2 ENSDARG00000008982 721.09 5405.39 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
50. ccng1 ENSDARG00000076667, ENSDARG00000110260 721.09 5405.39 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
51. cd2bp2 ENSDARG00000027357, ENSDARG00000115040, ENSDARG00000115297 721.09 5405.39 CD2 (cytoplasmic tail) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-925]
52. cox7a2a ENSDARG00000053217 721.09 5405.39 cytochrome c oxidase subunit 7A2a [Source:ZFIN;Acc:ZDB-GENE-050522-153]
53. cyt1l ENSDARG00000036832 721.09 5405.39 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
54. dcun1d1 ENSDARG00000099642 721.09 5405.39 DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5443]
55. ddost ENSDARG00000037318 721.09 5405.39 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-040426-2147]
56. dnaja2 ENSDARG00000104066 721.09 5405.39 DnaJ (Hsp40) homolog, subfamily A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2884]
57. eef2b ENSDARG00000100371, ENSDARG00000109247 721.09 5405.39 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
58. eif1b ENSDARG00000012688 721.09 5405.39 eukaryotic translation initiation factor 1B [Source:ZFIN;Acc:ZDB-GENE-030131-956]
59. eif2d ENSDARG00000012929 721.09 5405.39 eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
60. eif5 ENSDARG00000003681 721.09 5405.39 eukaryotic translation initiation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-975]
61. elavl1 721.09 5405.39 ELAV like RNA binding protein 1, transcript variant X3
62. gapdh ENSDARG00000043457 721.09 5405.39 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
63. gart ENSDARG00000101089 721.09 5405.39 phosphoribosylglycinamide formyltransferase [Source:ZFIN;Acc:ZDB-GENE-000616-14]
64. gpt2l ENSDARG00000019541 721.09 5405.39 glutamic pyruvate transaminase (alanine aminotransferase) 2, like [Source:ZFIN;Acc:ZDB-GENE-050302-11]
65. hbae1_1 721.09 5405.39 hemoglobin, alpha embryonic 1
66. hbbe3 ENSDARG00000038147, ENSDARG00000109344 721.09 5405.39 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
67. hhatlb ENSDARG00000005139 721.09 5405.39 hedgehog acyltransferase like, b [Source:ZFIN;Acc:ZDB-GENE-050506-130]
68. hmga1a ENSDARG00000028335 721.09 5405.39 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
69. hmgb1a ENSDARG00000099175, ENSDARG00000114353 721.09 5405.39 high mobility group box 1a [Source:ZFIN;Acc:ZDB-GENE-030131-341]
70. hnrnph1l ENSDARG00000005551 721.09 5405.39 heterogeneous nuclear ribonucleoprotein H1, like [Source:ZFIN;Acc:ZDB-GENE-030131-275]
71. hoxc6a ENSDARG00000070343 721.09 5405.39 homeobox C6a [Source:ZFIN;Acc:ZDB-GENE-990415-113]
72. hsp90ab1 ENSDARG00000029150 721.09 5405.39 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
73. khdrbs1b ENSDARG00000070475 721.09 5405.39 KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
74. krt8 ENSDARG00000058358, ENSDARG00000109279 721.09 5405.39 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
75. lamb2 ENSDARG00000002084 721.09 5405.39 laminin, beta 2 (laminin S) [Source:ZFIN;Acc:ZDB-GENE-081030-4]
76. m6pr ENSDARG00000018432 721.09 5405.39 mannose-6-phosphate receptor (cation dependent) [Source:ZFIN;Acc:ZDB-GENE-040426-2285]
77. map3k1 ENSDARG00000098405 721.09 5405.39 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-090313-412]
78. marcksb ENSDARG00000008803 721.09 5405.39 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
79. mcm5 ENSDARG00000019507 721.09 5405.39 minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
80. mdh1a mdh1a 721.09 5405.39
81. mid2 ENSDARG00000034871 721.09 5405.39 midline 2 [Source:ZFIN;Acc:ZDB-GENE-090220-1]
82. mrpl13 ENSDARG00000056903 721.09 5405.39 mitochondrial ribosomal protein L13 [Source:ZFIN;Acc:ZDB-GENE-050522-167]
83. msna ENSDARG00000058128, ENSDARG00000114614 721.09 5405.39 moesin a [Source:ZFIN;Acc:ZDB-GENE-021211-2]
84. mt-atp6 ENSDARG00000063911 721.09 5405.39 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
85. mt-cyb ENSDARG00000063924 721.09 5405.39 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
86. mtp_1 721.09 5405.39 microsomal triglyceride transfer protein
87. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 721.09 5405.39 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
88. myhz1.2 ENSDARG00000067995 721.09 5405.39 myosin, heavy polypeptide 1.2, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-73]
89. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 721.09 5405.39 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
90. mylz3 ENSDARG00000017441 721.09 5405.39 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
91. myo10 ENSDARG00000017004 721.09 5405.39 myosin X [Source:ZFIN;Acc:ZDB-GENE-070912-277]
92. ndufs8a ENSDARG00000051986 721.09 5405.39 NADH:ubiquinone oxidoreductase core subunit S8a [Source:ZFIN;Acc:ZDB-GENE-040426-2153]
93. nme2b.2 ENSDARG00000099420 721.09 5405.39 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
94. nucks1a ENSDARG00000078473 721.09 5405.39 nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
95. oaz1b ENSDARG00000104782 721.09 5405.39 ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
96. oxr1b ENSDARG00000063310 721.09 5405.39 oxidation resistance 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2438]
97. pak2a ENSDARG00000068177 721.09 5405.39 p21 protein (Cdc42/Rac)-activated kinase 2a [Source:ZFIN;Acc:ZDB-GENE-021011-2]
98. pmp22a ENSDARG00000105223, ENSDARG00000115339 721.09 5405.39 peripheral myelin protein 22a [Source:ZFIN;Acc:ZDB-GENE-030131-6757]
99. psap ENSDARG00000013968 721.09 5405.39 prosaposin [Source:ZFIN;Acc:ZDB-GENE-020108-1]
100. psmb3 ENSDARG00000013938 721.09 5405.39 proteasome subunit beta 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2682]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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