Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk2, section s10.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17038.53 127714.97
2. tpma ENSDARG00000033683 4184.10 31362.58 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. ckmb ENSDARG00000040565 2757.39 20668.45 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 2594.98 19451.08 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2521.64 18901.35 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. mt-nd2 ENSDARG00000063899 2214.29 16597.56 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-atp6 ENSDARG00000063911 2174.13 16296.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-co2 ENSDARG00000063908 1954.53 14650.49 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mylz3 ENSDARG00000017441 1858.49 13930.60 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. ckma ENSDARG00000035327, ENSDARG00000114671 1711.36 12827.77 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
11. mt-nd4 ENSDARG00000063917 1649.80 12366.33 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1618.37 12130.75 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
13. mt-co3 ENSDARG00000063912 1493.95 11198.14 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. atp2a1 ENSDARG00000020574 1290.07 9669.92 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1285.70 9637.17 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
16. mt-nd1 ENSDARG00000063895 1133.34 8495.13 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
17. acta1b ENSDARG00000055618 1112.82 8341.32 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
18. mt-cyb ENSDARG00000063924 1080.52 8099.21 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
19. myhz1.3 ENSDARG00000067997 1046.90 7847.20 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
20. tmsb4x ENSDARG00000077777 984.03 7375.95 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. pvalb1 ENSDARG00000037789 972.68 7290.88 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
22. actb2 ENSDARG00000037870 836.04 6266.67 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
23. actc1b ENSDARG00000099197 793.25 5945.93 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
24. tnnt3a ENSDARG00000030270 786.70 5896.83 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
25. tnni2a.4 ENSDARG00000029069 729.51 5468.16 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
26. eef1a1l1 ENSDARG00000020850 706.37 5294.71 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
27. si:dkey-151g10.6 si:dkey-151g10.6 691.97 5186.77
28. tnnt3b ENSDARG00000068457 637.83 4780.95 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
29. ppiaa ENSDARG00000009212 521.27 3907.26 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
30. acta1a ENSDARG00000036371 515.59 3864.69 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. mt-co1 ENSDARG00000063905 502.49 3766.49 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
32. myl1 ENSDARG00000014196 474.12 3553.84 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
33. mylpfb ENSDARG00000002589 469.31 3517.79 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. si:ch211-226o13.2 465.39 3488.40 si:ch211-226o13.2
35. actb1 ENSDARG00000037746, ENSDARG00000113649 436.14 3269.16 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. aldoab ENSDARG00000034470 422.16 3164.37 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
37. gapdh ENSDARG00000043457 382.87 2869.86 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 382.00 2863.34 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. zgc:66286 zgc:66286 366.72 2748.81
40. btf3 ENSDARG00000035400, ENSDARG00000116462 364.10 2729.17 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. rpl23 ENSDARG00000053457 356.68 2673.55 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. hspa8 ENSDARG00000068992, ENSDARG00000114726 326.12 2444.48 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
43. tpm3 ENSDARG00000005162 313.90 2352.89 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
44. rpl26 ENSDARG00000102317 313.46 2349.59 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
45. rpl8 ENSDARG00000014867 310.40 2326.65 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 309.53 2320.13 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
47. ttna ttna 301.23 2257.92
48. mt-nd3 ENSDARG00000063914 300.36 2251.40 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
49. rplp1 ENSDARG00000021864 295.12 2212.12 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. rpl36a ENSDARG00000058105, ENSDARG00000112656 293.81 2202.30 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 289.88 2172.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. myl10 ENSDARG00000062592 283.34 2123.82 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 280.72 2104.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. rpl11 ENSDARG00000043509 279.41 2094.36 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
55. rps23 ENSDARG00000021838 278.10 2084.54 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rpl18a ENSDARG00000025073 272.42 2041.97 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
57. hmga1a ENSDARG00000028335 271.55 2035.45 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
58. rps26l ENSDARG00000030408 265.44 1989.65 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
59. rps14 ENSDARG00000036629 263.25 1973.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
60. nme2b.2 ENSDARG00000099420 257.58 1930.73 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
61. rpl27 ENSDARG00000015128 255.83 1917.61 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
62. ATP5B 252.34 1891.45 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
63. myhz2 ENSDARG00000012944 251.47 1884.93 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
64. zgc:112425 zgc:112425 251.47 1884.93
65. eif5a ENSDARG00000017235 248.41 1862.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. eef2b ENSDARG00000100371, ENSDARG00000109247 246.23 1845.66 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
67. ttnb ttnb 245.79 1842.36
68. col1a1a ENSDARG00000012405, ENSDARG00000116113 244.04 1829.24 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
69. atp5g3b 242.73 1819.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
70. rps9 ENSDARG00000011405, ENSDARG00000113248 240.11 1799.78 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
71. col1a1b ENSDARG00000035809 238.37 1786.74 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
72. rpl19 ENSDARG00000013307 235.75 1767.10 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. rps5 ENSDARG00000043453 231.82 1737.64 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
74. rpl9 ENSDARG00000037350, ENSDARG00000112384 223.52 1675.43 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
75. fabp3 ENSDARG00000023290 217.85 1632.93 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
76. atp5g1 214.79 1609.99 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
77. apoc1l apoc1l 209.99 1574.01
78. rps2 ENSDARG00000077291 207.81 1557.67 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
79. rplp2 ENSDARG00000101406 199.95 1498.76 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
80. fkbp1aa ENSDARG00000022684 196.46 1472.60 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
81. rps27.1 ENSDARG00000023298 194.27 1456.18 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
82. rps20 ENSDARG00000036044 191.22 1433.32 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
83. rpl5b ENSDARG00000015862, ENSDARG00000109661 190.35 1426.80 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
84. rps15 ENSDARG00000070849, ENSDARG00000110979 188.60 1413.68 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
85. zgc:113413 zgc:113413 187.29 1403.86
86. pkmb ENSDARG00000099860 186.42 1397.34 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
87. apoa1b ENSDARG00000101324 185.98 1394.04 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
88. rpl7 ENSDARG00000007320 184.67 1384.22 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
89. rpl18 ENSDARG00000029533 182.49 1367.88 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
90. smyhc1 ENSDARG00000099959, ENSDARG00000115916 181.61 1361.29 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
91. tmem38a ENSDARG00000024047 180.30 1351.47 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
92. COX5B_1 ENSDARG00000015978 179.87 1348.24 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
93. rps6 ENSDARG00000019778 177.68 1331.83 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
94. rpl15 ENSDARG00000009285 177.25 1328.61 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
95. RPL29 ENSDARG00000077717 176.81 1325.31 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
96. pvalb4 ENSDARG00000024433 176.81 1325.31 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
97. rps3 ENSDARG00000103007 175.50 1315.49 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
98. atp1b1a ENSDARG00000013144 173.32 1299.15 ATPase Na+/K+ transporting subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-001127-3]
99. ak1 ENSDARG00000001950 172.01 1289.33 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
100. si:ch73-367p23.2 ENSDARG00000096257, ENSDARG00000112155 171.57 1286.03 si:ch73-367p23.2 [Source:ZFIN;Acc:ZDB-GENE-120215-61]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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