Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s3.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13231.78 99187.78
2. krt4 ENSDARG00000017624, ENSDARG00000115790 7808.92 58537.06 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 5422.86 40650.73 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 2602.97 19512.33 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-nd4 ENSDARG00000063917 2169.14 16260.26 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. mt-co2 ENSDARG00000063908 1735.32 13008.27 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. zgc:92533 zgc:92533 1735.32 13008.27
8. actc1b ENSDARG00000099197 1301.49 9756.20 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
9. ckmb ENSDARG00000040565 1301.49 9756.20 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
10. mt-co3 ENSDARG00000063912 1301.49 9756.20 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. acta1b ENSDARG00000055618 1084.57 8130.13 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. atp2a1 ENSDARG00000020574 1084.57 8130.13 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. eef2b ENSDARG00000100371, ENSDARG00000109247 1084.57 8130.13 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
14. eif5a ENSDARG00000017235 1084.57 8130.13 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
15. mylz3 ENSDARG00000017441 1084.57 8130.13 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
16. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1084.57 8130.13 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
17. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1084.57 8130.13 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
18. ckma ENSDARG00000035327, ENSDARG00000114671 867.66 6504.13 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
19. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 867.66 6504.13 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
20. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 867.66 6504.13 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
21. rps2 ENSDARG00000077291 867.66 6504.13 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
22. rps4x ENSDARG00000014690 867.66 6504.13 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
23. tmsb4x ENSDARG00000077777 867.66 6504.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
24. tnnt3b ENSDARG00000068457 867.66 6504.13 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
25. aldoab ENSDARG00000034470 650.74 4878.06 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
26. apobb apobb 650.74 4878.06
27. apoc1l apoc1l 650.74 4878.06
28. csrp1a ENSDARG00000006603 650.74 4878.06 cysteine and glycine-rich protein 1a [Source:ZFIN;Acc:ZDB-GENE-030909-4]
29. eef1a1l1 ENSDARG00000020850 650.74 4878.06 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
30. efemp2a ENSDARG00000094324 650.74 4878.06 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
31. icn ENSDARG00000009978 650.74 4878.06 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
32. mt-atp6 ENSDARG00000063911 650.74 4878.06 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
33. myhz1.3 ENSDARG00000067997 650.74 4878.06 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
34. mylpfb ENSDARG00000002589 650.74 4878.06 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
35. paics ENSDARG00000033539 650.74 4878.06 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9762]
36. pvalb1 ENSDARG00000037789 650.74 4878.06 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
37. pvalb4 ENSDARG00000024433 650.74 4878.06 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
38. rplp2 ENSDARG00000101406 650.74 4878.06 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
39. zgc:195001 ENSDARG00000070484 650.74 4878.06 zgc:195001 [Source:ZFIN;Acc:ZDB-GENE-081022-173]
40. CU914813.1 CU914813.1 433.83 3252.07
41. HOMER2 ENSDARG00000059349 433.83 3252.07 homer scaffold protein 2 [Source:ZFIN;Acc:ZDB-GENE-050522-417]
42. KDM6B KDM6B 433.83 3252.07
43. actb2 ENSDARG00000037870 433.83 3252.07 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
44. actn3a ENSDARG00000013755, ENSDARG00000111128 433.83 3252.07 actinin alpha 3a [Source:ZFIN;Acc:ZDB-GENE-000329-9]
45. apoa1a ENSDARG00000012076, ENSDARG00000110395 433.83 3252.07 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
46. apoa1b ENSDARG00000101324 433.83 3252.07 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
47. apoa2 ENSDARG00000015866 433.83 3252.07 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
48. apoeb ENSDARG00000040295 433.83 3252.07 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
49. atp1a1a.1 ENSDARG00000002791 433.83 3252.07 ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-001212-1]
50. bhmt ENSDARG00000013430 433.83 3252.07 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
51. cdc42l ENSDARG00000040158, ENSDARG00000116748 433.83 3252.07 cell division cycle 42, like [Source:ZFIN;Acc:ZDB-GENE-030131-6069]
52. col12a1b ENSDARG00000019601 433.83 3252.07 collagen, type XII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-120215-116]
53. col1a1a ENSDARG00000012405, ENSDARG00000116113 433.83 3252.07 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
54. cpz ENSDARG00000075521 433.83 3252.07 carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
55. dao.1 ENSDARG00000035602 433.83 3252.07 D-amino-acid oxidase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050913-127]
56. hbbe1.1 ENSDARG00000113599 433.83 3252.07 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
57. hmga1a ENSDARG00000028335 433.83 3252.07 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
58. mea1 ENSDARG00000039820 433.83 3252.07 male-enhanced antigen 1 [Source:ZFIN;Acc:ZDB-GENE-070424-117]
59. mt-nd1 ENSDARG00000063895 433.83 3252.07 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
60. nme2b.2 ENSDARG00000099420 433.83 3252.07 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
61. pbx4 ENSDARG00000052150 433.83 3252.07 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
62. pdha1a ENSDARG00000012387, ENSDARG00000116841 433.83 3252.07 pyruvate dehydrogenase E1 alpha 1 subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-2719]
63. pgam2 ENSDARG00000057571 433.83 3252.07 phosphoglycerate mutase 2 (muscle) [Source:ZFIN;Acc:ZDB-GENE-040116-6]
64. pkmb ENSDARG00000099860 433.83 3252.07 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
65. prx ENSDARG00000017246 433.83 3252.07 periaxin [Source:ZFIN;Acc:ZDB-GENE-030131-5790]
66. psmc6 ENSDARG00000037038, ENSDARG00000111223, ENSDARG00000114650 433.83 3252.07 proteasome 26S subunit, ATPase 6 [Source:ZFIN;Acc:ZDB-GENE-030131-304]
67. rpl18a ENSDARG00000025073 433.83 3252.07 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
68. rpl34 ENSDARG00000029500 433.83 3252.07 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
69. rpl35a ENSDARG00000088030 433.83 3252.07 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
70. rpl36a ENSDARG00000058105, ENSDARG00000112656 433.83 3252.07 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
71. rpl8 ENSDARG00000014867 433.83 3252.07 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
72. rps10 ENSDARG00000034897 433.83 3252.07 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
73. rps15a ENSDARG00000010160 433.83 3252.07 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
74. rps23 ENSDARG00000021838 433.83 3252.07 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
75. si:ch211-226o13.2 433.83 3252.07 si:ch211-226o13.2
76. si:dkey-151g10.6 si:dkey-151g10.6 433.83 3252.07
77. srl ENSDARG00000104587 433.83 3252.07 sarcalumenin [Source:ZFIN;Acc:ZDB-GENE-061110-91]
78. syncrip ENSDARG00000040184 433.83 3252.07 synaptotagmin binding, cytoplasmic RNA interacting protein [Source:ZFIN;Acc:ZDB-GENE-030131-4862]
79. tmed10 ENSDARG00000041391, ENSDARG00000110672 433.83 3252.07 transmembrane p24 trafficking protein 10 [Source:ZFIN;Acc:ZDB-GENE-030131-4915]
80. vamp5 ENSDARG00000068262 433.83 3252.07 vesicle-associated membrane protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4209]
81. zgc:153129 zgc:153129 433.83 3252.07
82. zgc:66286 zgc:66286 433.83 3252.07
83. ATP5B 216.91 1626.00 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
84. BX294434.1 ENSDARG00000061272 216.91 1626.00 solute carrier family 41 member 1 [Source:NCBI gene;Acc:564564]
85. BX511252.1 BX511252.1 216.91 1626.00
86. BX897684.1 BX897684.1 216.91 1626.00
87. CABZ01070258.1 ENSDARG00000105687 216.91 1626.00
88. CABZ01076275.1 ENSDARG00000100753 216.91 1626.00 scavenger receptor class B, member 2b [Source:NCBI gene;Acc:564077]
89. CCDC86 CCDC86 216.91 1626.00
90. CDS1 ENSDARG00000019549 216.91 1626.00 CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 [Source:ZFIN;Acc:ZDB-GENE-070705-78]
91. COX5B_1 ENSDARG00000015978 216.91 1626.00 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
92. CU302436.1 ENSDARG00000114500 216.91 1626.00 si:dkey-108k21.25 [Source:NCBI gene;Acc:103909883]
93. CU571336.1 ENSDARG00000099892 216.91 1626.00
94. CU929219.1 CU929219.1 216.91 1626.00
95. CZv9_NA991H1orf52 CZv9_NA991H1orf52 216.91 1626.00
96. GIGYF1 216.91 1626.00 GRB10 interacting GYF protein 1, transcript variant X6
97. IP6K1 ENSDARG00000073744 216.91 1626.00 inositol hexakisphosphate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-110317-2]
98. LGALS3 LGALS3 216.91 1626.00
99. MRPL52 ENSDARG00000090568 216.91 1626.00 mitochondrial ribosomal protein L52 [Source:ZFIN;Acc:ZDB-GENE-110325-1]
100. MYOM1 MYOM1 216.91 1626.00
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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