Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_trunk1, section s21.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24511.79 183734.18
2. tpma ENSDARG00000033683 3616.08 27105.22 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 2674.13 20044.60 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. ckmb ENSDARG00000040565 2632.01 19728.88 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. pvalb2 ENSDARG00000002768, ENSDARG00000114085 2269.68 17012.95 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
6. ckma ENSDARG00000035327, ENSDARG00000114671 2227.08 16693.63 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1799.18 13486.20 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
8. atp2a1 ENSDARG00000020574 1536.89 11520.14 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. mylz3 ENSDARG00000017441 1501.47 11254.64 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
10. mt-co2 ENSDARG00000063908 1498.12 11229.53 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. mt-atp6 ENSDARG00000063911 1345.92 10088.68 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. actc1b ENSDARG00000099197 1232.96 9241.96 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
13. mt-nd2 ENSDARG00000063899 1175.52 8811.40 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. tnnc2 ENSDARG00000070835, ENSDARG00000111155 1131.49 8481.36 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
15. mt-nd4 ENSDARG00000063917 1100.86 8251.77 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. acta1b ENSDARG00000055618 1052.04 7885.83 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
17. actb2 ENSDARG00000037870 1040.07 7796.10 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. apoc1l apoc1l 1022.84 7666.95
19. mt-co3 ENSDARG00000063912 984.07 7376.34 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. tmsb4x ENSDARG00000077777 953.44 7146.75 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
21. mt-cyb ENSDARG00000063924 819.42 6142.17 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. myhz1.3 ENSDARG00000067997 807.93 6056.04 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. eef1a1l1 ENSDARG00000020850 745.23 5586.06 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. pvalb1 ENSDARG00000037789 737.10 5525.12 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
25. tnni2a.4 ENSDARG00000029069 736.62 5521.52 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
26. mt-nd1 ENSDARG00000063895 676.79 5073.05 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
27. apoa2 ENSDARG00000015866 661.95 4961.81 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
28. si:dkey-151g10.6 si:dkey-151g10.6 634.19 4753.73
29. tnnt3a ENSDARG00000030270 603.56 4524.13 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
30. tnnt3b ENSDARG00000068457 593.51 4448.80 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
31. si:ch211-226o13.2 493.47 3698.93 si:ch211-226o13.2
32. apobb apobb 490.12 3673.82
33. mylpfb ENSDARG00000002589 466.67 3498.04 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
34. myl1 ENSDARG00000014196 461.88 3462.14 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
35. apoa1b ENSDARG00000101324 453.74 3401.12 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
36. mt-co1 ENSDARG00000063905 429.33 3218.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
37. actb1 ENSDARG00000037746, ENSDARG00000113649 422.63 3167.93 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. acta1a ENSDARG00000036371 396.79 2974.24 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
39. ppiaa ENSDARG00000009212 379.08 2841.49 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
40. zgc:66286 zgc:66286 353.71 2651.32
41. rpl23 ENSDARG00000053457 342.22 2565.19 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. apoeb ENSDARG00000040295 333.13 2497.06 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
43. rpl8 ENSDARG00000014867 329.30 2468.35 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
44. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 326.91 2450.43 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
45. rpl10a ENSDARG00000042905, ENSDARG00000115649 302.98 2271.06 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
46. ttna ttna 302.98 2271.06
47. eef2b ENSDARG00000100371, ENSDARG00000109247 295.32 2213.64 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
48. aldoab ENSDARG00000034470 292.45 2192.13 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
49. btf3 ENSDARG00000035400, ENSDARG00000116462 289.57 2170.54 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
50. nme2b.2 ENSDARG00000099420 281.92 2113.20 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
51. rplp1 ENSDARG00000021864 277.61 2080.89 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. myl10 ENSDARG00000062592 274.26 2055.78 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
53. tpm3 ENSDARG00000005162 271.86 2037.79 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
54. gapdh ENSDARG00000043457 263.25 1973.26 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
55. ttnb ttnb 261.33 1958.86
56. rpl18a ENSDARG00000025073 256.55 1923.03 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
57. hspa8 ENSDARG00000068992, ENSDARG00000114726 248.41 1862.02 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
58. apoa1a ENSDARG00000012076, ENSDARG00000110395 246.97 1851.22 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
59. zgc:92533 zgc:92533 246.50 1847.70
60. col1a1a ENSDARG00000012405, ENSDARG00000116113 243.15 1822.59 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
61. col1a1b ENSDARG00000035809 241.23 1808.20 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
62. rpl21 ENSDARG00000010516, ENSDARG00000110263 239.80 1797.48 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
63. rps23 ENSDARG00000021838 231.66 1736.46 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
64. rps27a ENSDARG00000032725, ENSDARG00000114059 231.66 1736.46 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
65. rpl36a ENSDARG00000058105, ENSDARG00000112656 230.22 1725.67 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
66. rpl26 ENSDARG00000102317 224.48 1682.65 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
67. zgc:161979_1 zgc:161979_1 217.30 1628.83
68. rpl19 ENSDARG00000013307 213.47 1600.12 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
69. rps2 ENSDARG00000077291 206.29 1546.30 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
70. zgc:112425 zgc:112425 205.33 1539.10
71. hmga1a ENSDARG00000028335 200.07 1499.67 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
72. rpl9 ENSDARG00000037350, ENSDARG00000112384 200.07 1499.67 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
73. rps20 ENSDARG00000036044 197.68 1481.76 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
74. fabp3 ENSDARG00000023290 195.28 1463.77 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
75. rps14 ENSDARG00000036629 194.80 1460.17 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
76. myhz2 ENSDARG00000012944 189.06 1417.15 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
77. lyz ENSDARG00000057789, ENSDARG00000109290, ENSDARG00000114098 186.19 1395.63 lysozyme [Source:ZFIN;Acc:ZDB-GENE-020515-2]
78. ATP5B 183.32 1374.12 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
79. atp5g1 183.32 1374.12 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
80. pvalb4 ENSDARG00000024433 182.36 1366.92 parvalbumin 4 [Source:ZFIN;Acc:ZDB-GENE-040625-48]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 181.40 1359.73 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. rpl27 ENSDARG00000015128 180.92 1356.13 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
83. rpl36 ENSDARG00000100588 174.70 1309.51 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
84. mt-nd3 ENSDARG00000063914 173.74 1302.31 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
85. rps26l ENSDARG00000030408 171.83 1287.99 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
86. eif5a ENSDARG00000017235 168.48 1262.88 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
87. pkmb ENSDARG00000099860 168.00 1259.29 pyruvate kinase M1/2b [Source:ZFIN;Acc:ZDB-GENE-040801-230]
88. rpl11 ENSDARG00000043509 167.04 1252.09 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
89. rplp2 ENSDARG00000101406 166.56 1248.49 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
90. rpl7 ENSDARG00000007320 162.26 1216.26 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
91. tmem38a ENSDARG00000024047 160.82 1205.47 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
92. atp5g3b 160.34 1201.87 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. aldoaa ENSDARG00000011665 159.39 1194.75 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
94. rpl18 ENSDARG00000029533 157.47 1180.36 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
95. rplp0 ENSDARG00000051783 156.03 1169.56 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
96. rpl5b ENSDARG00000015862, ENSDARG00000109661 155.08 1162.44 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
97. rps15 ENSDARG00000070849, ENSDARG00000110979 153.64 1151.65 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
98. zgc:161979 zgc:161979 153.64 1151.65
99. rps3 ENSDARG00000103007 152.68 1144.45 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
100. ahcy ENSDARG00000005191 147.90 1108.62 adenosylhomocysteinase [Source:ZFIN;Acc:ZDB-GENE-031219-6]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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