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Experiment Zebrafish_28hpf_whole3_PA, section s9.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17307.74 129747.97
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4359.64 32682.17 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1448.85 10861.35 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. si:dkey-151g10.6 si:dkey-151g10.6 1193.75 8948.98
5. actb2 ENSDARG00000037870 1121.80 8409.61 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. eef1a1l1 ENSDARG00000020850 958.27 7183.70 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
7. mt-nd2 ENSDARG00000063899 941.92 7061.13 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. mt-co3 ENSDARG00000063912 856.88 6423.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. efemp2a ENSDARG00000094324 778.39 5835.22 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
10. mt-co2 ENSDARG00000063908 752.23 5639.11 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
11. hspa8 ENSDARG00000068992, ENSDARG00000114726 699.90 5246.82 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
12. ppiaa ENSDARG00000009212 686.82 5148.77 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
13. mt-nd4 ENSDARG00000063917 680.27 5099.66 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. hmga1a ENSDARG00000028335 634.49 4756.47 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
15. eef2b ENSDARG00000100371, ENSDARG00000109247 598.51 4486.75 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
16. zgc:112425 zgc:112425 595.24 4462.23
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 588.70 4413.21 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. id1 ENSDARG00000040764 562.53 4217.02 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 503.66 3775.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. zgc:66286 zgc:66286 493.85 3702.16
21. acta1a ENSDARG00000036371 487.31 3653.13 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
22. rpl18a ENSDARG00000025073 474.23 3555.08 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
23. btf3 ENSDARG00000035400, ENSDARG00000116462 467.69 3506.05 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
24. rpl23 ENSDARG00000053457 467.69 3506.05 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
25. mt-atp6 ENSDARG00000063911 451.34 3383.48 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
26. rpl9 ENSDARG00000037350, ENSDARG00000112384 428.44 3211.81 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
27. rpl26 ENSDARG00000102317 421.90 3162.79 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
28. rpl21 ENSDARG00000010516, ENSDARG00000110263 405.55 3040.22 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
29. rpl8 ENSDARG00000014867 405.55 3040.22 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. rpl36a ENSDARG00000058105, ENSDARG00000112656 392.47 2942.16 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
31. myl10 ENSDARG00000062592 376.11 2819.52 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
32. rps27a ENSDARG00000032725, ENSDARG00000114059 363.03 2721.46 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
33. ptmab ENSDARG00000101766 343.41 2574.38 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
34. rpl19 ENSDARG00000013307 336.87 2525.36 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
35. rps23 ENSDARG00000021838 330.33 2476.33 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. rps12 ENSDARG00000036875, ENSDARG00000115157 327.05 2451.74 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
37. rps14 ENSDARG00000036629 327.05 2451.74 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
38. pabpc1a ENSDARG00000017219 323.78 2427.23 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
39. mt-cyb ENSDARG00000063924 297.62 2231.12 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rpl11 ENSDARG00000043509 297.62 2231.12 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
41. rpl27 ENSDARG00000015128 297.62 2231.12 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
42. rpl36 ENSDARG00000100588 294.35 2206.60 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
43. rpl5b ENSDARG00000015862, ENSDARG00000109661 294.35 2206.60 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
44. smyhc1 ENSDARG00000099959, ENSDARG00000115916 281.27 2108.55 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
45. cd81 cd81 278.00 2084.04
46. si:dkey-150i13.2 ENSDARG00000071052 278.00 2084.04 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
47. cfl1l ENSDARG00000012972 274.73 2059.52 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
48. mt-nd1 ENSDARG00000063895 271.46 2035.01 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
49. RPL29 ENSDARG00000077717 264.91 1985.91 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
50. eif5a ENSDARG00000017235 264.91 1985.91 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
51. hsp90ab1 ENSDARG00000029150 264.91 1985.91 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
52. actc1b ENSDARG00000099197 261.64 1961.39 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
53. rps27.1 ENSDARG00000023298 261.64 1961.39 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
54. rps4x ENSDARG00000014690 261.64 1961.39 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
55. hsp90aa1.1 ENSDARG00000010478 258.37 1936.88 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
56. rps20 ENSDARG00000036044 258.37 1936.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
57. rps26l ENSDARG00000030408 258.37 1936.88 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
58. rps15a ENSDARG00000010160 255.10 1912.36 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
59. rps15 ENSDARG00000070849, ENSDARG00000110979 251.83 1887.85 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
60. si:dkeyp-86f7.3 si:dkeyp-86f7.3 245.29 1838.82
61. rplp1 ENSDARG00000021864 242.02 1814.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. krt8 ENSDARG00000058358, ENSDARG00000109279 238.75 1789.80 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
63. AC024175.17 AC024175.17 235.48 1765.28
64. faua ENSDARG00000099022 235.48 1765.28 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
65. rpl15 ENSDARG00000009285 235.48 1765.28 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
66. rps2 ENSDARG00000077291 235.48 1765.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 232.21 1740.77 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
68. rplp0 ENSDARG00000051783 228.94 1716.26 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
69. hnrnpab hnrnpab 225.67 1691.74
70. si:ch1073-429i10.3 225.67 1691.74 si:ch1073-429i10.3, transcript variant X2
71. hmgn2 ENSDARG00000099572 219.13 1642.71 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
72. rps10 ENSDARG00000034897 219.13 1642.71 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
73. rps6 ENSDARG00000019778 219.13 1642.71 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
74. rps9 ENSDARG00000011405, ENSDARG00000113248 219.13 1642.71 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
75. AL954137.2 ENSDARG00000114408 212.59 1593.69
76. col1a1a ENSDARG00000012405, ENSDARG00000116113 212.59 1593.69 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
77. pnrc2 ENSDARG00000053291, ENSDARG00000112537 212.59 1593.69 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
78. pcna ENSDARG00000054155 209.32 1569.17 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
79. bcam ENSDARG00000090190 206.04 1544.58 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
80. rpl7 ENSDARG00000007320 206.04 1544.58 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
81. rps29 ENSDARG00000041232 202.77 1520.07 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
82. rps5 ENSDARG00000043453 199.50 1495.56 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. rpsa ENSDARG00000019181 199.50 1495.56 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. khdrbs1a ENSDARG00000052856 196.23 1471.04 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
85. rpl6 ENSDARG00000058451 196.23 1471.04 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
86. cfl1 ENSDARG00000021124 189.69 1422.02 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
87. hnrnpa0a ENSDARG00000089302 186.42 1397.50 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
88. rpl17 ENSDARG00000057556 186.42 1397.50 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
89. h3f3a 183.15 1372.99 H3 histone, family 3A, transcript variant X1
90. rps19 ENSDARG00000030602 183.15 1372.99 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
91. ran ENSDARG00000057026 179.88 1348.48 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
92. rpl38 ENSDARG00000006413 179.88 1348.48 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
93. ttna ttna 179.88 1348.48
94. fabp3 ENSDARG00000023290 176.61 1323.96 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
95. rpl18 ENSDARG00000029533 176.61 1323.96 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. tpm3 ENSDARG00000005162 176.61 1323.96 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
97. rps3 ENSDARG00000103007 173.34 1299.45 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
98. tnnc2 ENSDARG00000070835, ENSDARG00000111155 173.34 1299.45 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
99. fkbp1aa ENSDARG00000022684 170.07 1274.93 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
100. rps24 ENSDARG00000039347 170.07 1274.93 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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