Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s8.

Sample reads: 133,388. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21561.06 161641.28
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4399.81 32984.97 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. si:dkey-151g10.6 si:dkey-151g10.6 1247.19 9350.07
4. actb2 ENSDARG00000037870 1125.94 8441.07 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. tmsb4x ENSDARG00000077777 1076.44 8069.97 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. mt-co2 ENSDARG00000063908 1019.53 7643.32 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. eef1a1l1 ENSDARG00000020850 1014.58 7606.21 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. mt-nd4 ENSDARG00000063917 895.80 6715.73 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-nd2 ENSDARG00000063899 890.85 6678.62 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. ppiaa ENSDARG00000009212 876.00 6567.29 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. efemp2a ENSDARG00000094324 828.99 6214.86 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
12. mt-co3 ENSDARG00000063912 754.75 5658.29 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 682.99 5120.31 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. id1 ENSDARG00000040764 613.70 4600.85 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 586.48 4396.79 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. zgc:112425 zgc:112425 581.53 4359.68
17. hmga1a ENSDARG00000028335 574.10 4303.97 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 559.26 4192.72 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 546.88 4099.91 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. rpl23 ENSDARG00000053457 536.98 4025.69 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
21. rpl8 ENSDARG00000014867 497.39 3728.89 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
22. btf3 ENSDARG00000035400, ENSDARG00000116462 475.12 3561.93 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
23. rpl21 ENSDARG00000010516, ENSDARG00000110263 475.12 3561.93 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
24. mt-atp6 ENSDARG00000063911 435.53 3265.13 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
25. rps23 ENSDARG00000021838 435.53 3265.13 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
26. rpl26 ENSDARG00000102317 423.15 3172.32 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
27. rps14 ENSDARG00000036629 423.15 3172.32 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
28. zgc:66286 zgc:66286 420.68 3153.80
29. rplp1 ENSDARG00000021864 415.73 3116.69 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
30. acta1a ENSDARG00000036371 413.26 3098.17 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. rpl9 ENSDARG00000037350, ENSDARG00000112384 413.26 3098.17 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
32. rpl18a ENSDARG00000025073 408.31 3061.06 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
33. rpl36a ENSDARG00000058105, ENSDARG00000112656 358.81 2689.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
34. rpl27 ENSDARG00000015128 356.34 2671.45 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
35. hsp90ab1 ENSDARG00000029150 351.39 2634.34 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
36. mt-nd1 ENSDARG00000063895 348.92 2615.82 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
37. rps26l ENSDARG00000030408 343.97 2578.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
38. rpl11 ENSDARG00000043509 329.12 2467.38 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
39. myl10 ENSDARG00000062592 326.65 2448.86 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
40. pabpc1a ENSDARG00000017219 321.70 2411.76 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
41. rpl36 ENSDARG00000100588 321.70 2411.76 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
42. rps2 ENSDARG00000077291 314.27 2356.05 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
43. rpl15 ENSDARG00000009285 309.32 2318.94 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
44. rps6 ENSDARG00000019778 304.37 2281.83 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
45. rps15a ENSDARG00000010160 301.90 2263.32 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
46. rps15 ENSDARG00000070849, ENSDARG00000110979 299.42 2244.72 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
47. rps29 ENSDARG00000041232 299.42 2244.72 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
48. eif5a ENSDARG00000017235 294.48 2207.69 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
49. rplp0 ENSDARG00000051783 294.48 2207.69 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
50. rpl19 ENSDARG00000013307 292.00 2189.10 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
51. rps12 ENSDARG00000036875, ENSDARG00000115157 292.00 2189.10 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
52. ptmab ENSDARG00000101766 287.05 2151.99 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
53. rpsa ENSDARG00000019181 284.58 2133.47 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
54. si:dkey-150i13.2 ENSDARG00000071052 284.58 2133.47 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
55. col1a1a ENSDARG00000012405, ENSDARG00000116113 274.68 2059.25 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
56. rpl5b ENSDARG00000015862, ENSDARG00000109661 274.68 2059.25 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
57. rpl7 ENSDARG00000007320 274.68 2059.25 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
58. rps27a ENSDARG00000032725, ENSDARG00000114059 269.73 2022.14 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
59. cfl1l ENSDARG00000012972 267.26 2003.62 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
60. mt-cyb ENSDARG00000063924 264.78 1985.03 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
61. rps4x ENSDARG00000014690 254.88 1910.81 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
62. rps5 ENSDARG00000043453 254.88 1910.81 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 254.88 1910.81 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. si:ch1073-429i10.3 254.88 1910.81 si:ch1073-429i10.3, transcript variant X2
65. faua ENSDARG00000099022 247.46 1855.18 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
66. rps19 ENSDARG00000030602 247.46 1855.18 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
67. rps3 ENSDARG00000103007 247.46 1855.18 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
68. AL954137.2 ENSDARG00000114408 244.98 1836.59
69. rpl39 ENSDARG00000036316, ENSDARG00000117167 244.98 1836.59 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
70. rps10 ENSDARG00000034897 244.98 1836.59 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
71. rps20 ENSDARG00000036044 244.98 1836.59 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 242.51 1818.08 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
73. rps27.1 ENSDARG00000023298 240.03 1799.48 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
74. si:dkeyp-86f7.3 si:dkeyp-86f7.3 232.61 1743.86
75. krt8 ENSDARG00000058358, ENSDARG00000109279 225.19 1688.23 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
76. rpl18 ENSDARG00000029533 225.19 1688.23 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
77. rpl23a ENSDARG00000006316 225.19 1688.23 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
78. RPL29 ENSDARG00000077717 215.29 1614.01 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. cd81 cd81 215.29 1614.01
80. pcna ENSDARG00000054155 210.34 1576.90 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
81. pfn1 ENSDARG00000088091 210.34 1576.90 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
82. col2a1a ENSDARG00000069093, ENSDARG00000111202 207.87 1558.38 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
83. rpl6 ENSDARG00000058451 200.44 1502.68 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
84. cyt1l ENSDARG00000036832 197.97 1484.16 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
85. rpl17 ENSDARG00000057556 190.54 1428.46 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
86. rps24 ENSDARG00000039347 190.54 1428.46 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
87. AC024175.17 AC024175.17 188.07 1409.94
88. rplp2l ENSDARG00000011201 185.59 1391.35 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
89. h3f3a 183.12 1372.83 H3 histone, family 3A, transcript variant X1
90. rpl38 ENSDARG00000006413 183.12 1372.83 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
91. hmgn2 ENSDARG00000099572 180.64 1354.24 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
92. cox8a ENSDARG00000095273 178.17 1335.72 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
93. bcam ENSDARG00000090190 173.22 1298.61 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
94. hnrnpab hnrnpab 173.22 1298.61
95. rpl14 ENSDARG00000103433 173.22 1298.61 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
96. actc1b ENSDARG00000099197 168.27 1261.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
97. fabp3 ENSDARG00000023290 168.27 1261.50 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
98. rpl24 ENSDARG00000099104 168.27 1261.50 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
99. hsp90aa1.1 ENSDARG00000010478 165.80 1242.99 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
100. smyhc1 ENSDARG00000099959, ENSDARG00000115916 165.80 1242.99 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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