Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s61.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5420.94 40636.68
2. eef2b ENSDARG00000100371, ENSDARG00000109247 2415.86 18109.87 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 2415.86 18109.87 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. actb2 ENSDARG00000037870 1590.93 11926.00 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. mt-co3 ENSDARG00000063912 1296.31 9717.45 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
6. hmga1a ENSDARG00000028335 1178.47 8834.10 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
7. mt-co2 ENSDARG00000063908 1178.47 8834.10 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. eef1a1l1 ENSDARG00000020850 1001.70 7508.99 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. rpl18a ENSDARG00000025073 1001.70 7508.99 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
10. si:dkey-151g10.6 si:dkey-151g10.6 1001.70 7508.99
11. rplp1 ENSDARG00000021864 942.77 7067.23 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
12. mt-atp6 ENSDARG00000063911 883.85 6625.55 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-nd2 ENSDARG00000063899 883.85 6625.55 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. mt-nd4 ENSDARG00000063917 883.85 6625.55 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. rps26l ENSDARG00000030408 707.08 5300.44 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
16. rps3 ENSDARG00000103007 707.08 5300.44 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
17. apoc1l apoc1l 648.16 4858.76
18. rpl19 ENSDARG00000013307 648.16 4858.76 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
19. hmgn2 ENSDARG00000099572 589.23 4417.01 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 589.23 4417.01 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. rps6 ENSDARG00000019778 589.23 4417.01 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
22. zgc:112425 zgc:112425 589.23 4417.01
23. cirbp cirbp 530.31 3975.33
24. ppiaa ENSDARG00000009212 530.31 3975.33 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
25. rpl23 ENSDARG00000053457 530.31 3975.33 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. rpl26 ENSDARG00000102317 530.31 3975.33 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
27. rps27.1 ENSDARG00000023298 530.31 3975.33 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
28. rps5 ENSDARG00000043453 530.31 3975.33 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
29. rpsa ENSDARG00000019181 530.31 3975.33 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
30. btf3 ENSDARG00000035400, ENSDARG00000116462 471.39 3533.65 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
31. fabp3 ENSDARG00000023290 471.39 3533.65 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
32. pabpc1a ENSDARG00000017219 471.39 3533.65 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
33. ptmab ENSDARG00000101766 471.39 3533.65 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
34. rpl39 ENSDARG00000036316, ENSDARG00000117167 471.39 3533.65 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
35. rpl9 ENSDARG00000037350, ENSDARG00000112384 471.39 3533.65 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
36. rps15a ENSDARG00000010160 471.39 3533.65 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
37. rps20 ENSDARG00000036044 471.39 3533.65 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
38. tmsb4x ENSDARG00000077777 471.39 3533.65 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
39. actc1b ENSDARG00000099197 412.46 3091.90 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
40. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 412.46 3091.90 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
41. id1 ENSDARG00000040764 412.46 3091.90 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
42. rpl5b ENSDARG00000015862, ENSDARG00000109661 412.46 3091.90 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
43. rps14 ENSDARG00000036629 412.46 3091.90 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
44. actb1 ENSDARG00000037746, ENSDARG00000113649 353.54 2650.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. ctslb ENSDARG00000039173, ENSDARG00000074306 353.54 2650.22 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
46. eif5a ENSDARG00000017235 353.54 2650.22 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
47. eif5a2 ENSDARG00000056186 353.54 2650.22 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
48. fetub ENSDARG00000053973 353.54 2650.22 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
49. krt8 ENSDARG00000058358, ENSDARG00000109279 353.54 2650.22 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
50. mt-nd1 ENSDARG00000063895 353.54 2650.22 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
51. rpl11 ENSDARG00000043509 353.54 2650.22 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
52. rpl15 ENSDARG00000009285 353.54 2650.22 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
53. rpl36 ENSDARG00000100588 353.54 2650.22 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
54. rpl36a ENSDARG00000058105, ENSDARG00000112656 353.54 2650.22 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
55. rpl8 ENSDARG00000014867 353.54 2650.22 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
56. tuba8l4 ENSDARG00000006260 353.54 2650.22 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
57. AL954137.2 ENSDARG00000114408 294.62 2208.54
58. BX511252.1 BX511252.1 294.62 2208.54
59. COX5B_1 ENSDARG00000015978 294.62 2208.54 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
60. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 294.62 2208.54 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
61. RPL29 ENSDARG00000077717 294.62 2208.54 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
62. apoa1b ENSDARG00000101324 294.62 2208.54 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
63. apoa2 ENSDARG00000015866 294.62 2208.54 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
64. cfl1 ENSDARG00000021124 294.62 2208.54 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
65. fth1a ENSDARG00000015551 294.62 2208.54 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
66. h3f3d ENSDARG00000045248 294.62 2208.54 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
67. hspa8 ENSDARG00000068992, ENSDARG00000114726 294.62 2208.54 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
68. khdrbs1a ENSDARG00000052856 294.62 2208.54 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
69. pcna ENSDARG00000054155 294.62 2208.54 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
70. ran ENSDARG00000057026 294.62 2208.54 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
71. rpl23a ENSDARG00000006316 294.62 2208.54 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
72. rpl24 ENSDARG00000099104 294.62 2208.54 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
73. rpl5a ENSDARG00000020197 294.62 2208.54 ribosomal protein L5a [Source:ZFIN;Acc:ZDB-GENE-030131-5161]
74. rps12 ENSDARG00000036875, ENSDARG00000115157 294.62 2208.54 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
75. rps23 ENSDARG00000021838 294.62 2208.54 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
76. tuba8l ENSDARG00000042708 294.62 2208.54 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
77. zgc:153129 zgc:153129 294.62 2208.54
78. acta1b ENSDARG00000055618 235.69 1766.79 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
79. apoa1a ENSDARG00000012076, ENSDARG00000110395 235.69 1766.79 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
80. apoeb ENSDARG00000040295 235.69 1766.79 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
81. atp5g3b 235.69 1766.79 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
82. bhmt ENSDARG00000013430 235.69 1766.79 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
83. calua ENSDARG00000045676 235.69 1766.79 calumenin a [Source:ZFIN;Acc:ZDB-GENE-040625-166]
84. cox8a ENSDARG00000095273 235.69 1766.79 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
85. eif3ja ENSDARG00000012603 235.69 1766.79 eukaryotic translation initiation factor 3, subunit Ja [Source:ZFIN;Acc:ZDB-GENE-040426-1266]
86. faua ENSDARG00000099022 235.69 1766.79 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
87. fkbp1aa ENSDARG00000022684 235.69 1766.79 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
88. gapdh ENSDARG00000043457 235.69 1766.79 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
89. gnb2l1 235.69 1766.79 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
90. hsp90ab1 ENSDARG00000029150 235.69 1766.79 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
91. pbx4 ENSDARG00000052150 235.69 1766.79 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
92. rpl27 ENSDARG00000015128 235.69 1766.79 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
93. rpl31 ENSDARG00000053365 235.69 1766.79 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
94. rpl35a ENSDARG00000088030 235.69 1766.79 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
95. rpl6 ENSDARG00000058451 235.69 1766.79 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. rps15 ENSDARG00000070849, ENSDARG00000110979 235.69 1766.79 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
97. rps29 ENSDARG00000041232 235.69 1766.79 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
98. rps9 ENSDARG00000011405, ENSDARG00000113248 235.69 1766.79 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
99. tnnc2 ENSDARG00000070835, ENSDARG00000111155 235.69 1766.79 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
100. tpma ENSDARG00000033683 235.69 1766.79 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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