Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s6.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20556.17 154077.60
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5288.89 39642.57 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. si:dkey-151g10.6 si:dkey-151g10.6 1236.04 9264.67
4. tmsb4x ENSDARG00000077777 1183.25 8868.98 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. mt-co2 ENSDARG00000063908 1077.65 8077.46 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. actb2 ENSDARG00000037870 996.91 7472.28 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. eef1a1l1 ENSDARG00000020850 922.37 6913.57 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. ppiaa ENSDARG00000009212 909.95 6820.48 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. rpl10a ENSDARG00000042905, ENSDARG00000115649 748.46 5610.04 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
10. mt-nd2 ENSDARG00000063899 711.19 5330.68 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. efemp2a ENSDARG00000094324 708.08 5307.37 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
12. mt-co3 ENSDARG00000063912 680.13 5097.88 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. mt-nd4 ENSDARG00000063917 664.61 4981.55 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. zgc:112425 zgc:112425 636.65 4771.97
15. hmga1a ENSDARG00000028335 633.55 4748.74 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
16. rps14 ENSDARG00000036629 614.91 4609.02 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
17. eef2b ENSDARG00000100371, ENSDARG00000109247 599.39 4492.69 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
18. actb1 ENSDARG00000037746, ENSDARG00000113649 565.22 4236.57 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
19. id1 ENSDARG00000040764 565.22 4236.57 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 559.01 4190.03 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. rpl8 ENSDARG00000014867 515.53 3864.13 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
22. mt-atp6 ENSDARG00000063911 481.37 3608.08 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. rpl9 ENSDARG00000037350, ENSDARG00000112384 481.37 3608.08 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
24. rpl18a ENSDARG00000025073 472.06 3538.30 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
25. rpl26 ENSDARG00000102317 465.84 3491.68 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
26. si:ch1073-429i10.3 444.11 3328.80 si:ch1073-429i10.3, transcript variant X2
27. btf3 ENSDARG00000035400, ENSDARG00000116462 441.00 3305.49 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
28. rps26l ENSDARG00000030408 428.58 3212.40 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
29. ptmab ENSDARG00000101766 416.15 3119.23 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
30. hsp90ab1 ENSDARG00000029150 400.63 3002.90 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
31. rpl23 ENSDARG00000053457 400.63 3002.90 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. rps23 ENSDARG00000021838 400.63 3002.90 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 397.52 2979.59 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. pabpc1a ENSDARG00000017219 369.57 2770.09 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
35. rps27a ENSDARG00000032725, ENSDARG00000114059 369.57 2770.09 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 366.46 2746.78 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. rpl11 ENSDARG00000043509 360.25 2700.23 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
38. rps29 ENSDARG00000041232 338.51 2537.28 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
39. acta1a ENSDARG00000036371 332.30 2490.74 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
40. rpl15 ENSDARG00000009285 332.30 2490.74 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
41. rpl36 ENSDARG00000100588 329.20 2467.50 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
42. krt8 ENSDARG00000058358, ENSDARG00000109279 326.09 2444.19 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
43. rpl19 ENSDARG00000013307 326.09 2444.19 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
44. rplp1 ENSDARG00000021864 326.09 2444.19 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. rpl27 ENSDARG00000015128 310.56 2327.78 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
46. mt-cyb ENSDARG00000063924 307.46 2304.55 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. apoc1l apoc1l 304.35 2281.24
48. rps4x ENSDARG00000014690 304.35 2281.24 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
49. rps20 ENSDARG00000036044 301.25 2258.00 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
50. rpl7 ENSDARG00000007320 282.61 2118.29 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
51. rps10 ENSDARG00000034897 282.61 2118.29 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
52. cfl1l ENSDARG00000012972 279.51 2095.05 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
53. rpl5b ENSDARG00000015862, ENSDARG00000109661 273.30 2048.50 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
54. rps15a ENSDARG00000010160 273.30 2048.50 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
55. mt-nd1 ENSDARG00000063895 263.98 1978.65 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
56. rpsa ENSDARG00000019181 263.98 1978.65 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
57. rpl39 ENSDARG00000036316, ENSDARG00000117167 260.87 1955.34 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
58. rps15 ENSDARG00000070849, ENSDARG00000110979 260.87 1955.34 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
59. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 257.77 1932.10 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
60. rps12 ENSDARG00000036875, ENSDARG00000115157 257.77 1932.10 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
61. eif5a ENSDARG00000017235 251.56 1885.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
62. si:dkeyp-86f7.3 si:dkeyp-86f7.3 251.56 1885.55
63. rps9 ENSDARG00000011405, ENSDARG00000113248 248.45 1862.24 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. rplp0 ENSDARG00000051783 245.34 1838.93 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
65. rps13 ENSDARG00000036298, ENSDARG00000112818 245.34 1838.93 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
66. bcam ENSDARG00000090190 242.24 1815.70 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
67. rps19 ENSDARG00000030602 242.24 1815.70 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
68. cyt1l ENSDARG00000036832 236.03 1769.15 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
69. faua ENSDARG00000099022 236.03 1769.15 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
70. pcna ENSDARG00000054155 236.03 1769.15 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
71. rps6 ENSDARG00000019778 232.92 1745.84 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
72. rps2 ENSDARG00000077291 229.82 1722.60 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
73. rps5 ENSDARG00000043453 229.82 1722.60 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
74. hnrnpab hnrnpab 223.61 1676.06
75. zgc:66286 zgc:66286 223.61 1676.06
76. cd81 cd81 220.50 1652.75
77. rps27.1 ENSDARG00000023298 220.50 1652.75 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
78. RPL29 ENSDARG00000077717 217.39 1629.43 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. apoeb ENSDARG00000040295 211.18 1582.89 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
80. cirbp cirbp 211.18 1582.89
81. rps18 ENSDARG00000100392 208.08 1559.65 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
82. rps3 ENSDARG00000103007 208.08 1559.65 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
83. rpl18 ENSDARG00000029533 204.97 1536.34 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
84. rpl30 ENSDARG00000035871, ENSDARG00000109253 204.97 1536.34 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
85. col1a1a ENSDARG00000012405, ENSDARG00000116113 201.87 1513.11 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
86. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 201.87 1513.11 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
87. hmgn2 ENSDARG00000099572 198.76 1489.79 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
88. rpl14 ENSDARG00000103433 198.76 1489.79 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
89. rpl22 ENSDARG00000070437 198.76 1489.79 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
90. si:dkey-150i13.2 ENSDARG00000071052 198.76 1489.79 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
91. zgc:92533 zgc:92533 198.76 1489.79
92. AL954137.2 ENSDARG00000114408 195.65 1466.48
93. myl10 ENSDARG00000062592 192.55 1443.25 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
94. rpl6 ENSDARG00000058451 192.55 1443.25 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
95. zgc:153129 zgc:153129 192.55 1443.25
96. cfl1 ENSDARG00000021124 186.34 1396.70 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
97. h3f3a 186.34 1396.70 H3 histone, family 3A, transcript variant X1
98. rps24 ENSDARG00000039347 186.34 1396.70 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
99. rpl28 ENSDARG00000005791 183.23 1373.39 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
100. AC024175.17 AC024175.17 180.13 1350.15
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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