Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s58.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9227.70 69166.02
2. zgc:112425 zgc:112425 1682.07 12607.92
3. hmga1a ENSDARG00000028335 1519.30 11387.88 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1431.20 10727.53 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. ppiaa ENSDARG00000009212 1340.22 10045.59 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
6. si:dkey-151g10.6 si:dkey-151g10.6 1248.44 9357.65
7. actb2 ENSDARG00000037870 1022.99 7667.80 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. ptmab ENSDARG00000101766 981.26 7355.01 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
9. mt-nd2 ENSDARG00000063899 919.70 6893.59 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. eef1a1l1 ENSDARG00000020850 842.79 6317.11 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-co2 ENSDARG00000063908 840.07 6296.73 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. mt-nd4 ENSDARG00000063917 830.00 6221.25 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. hspa8 ENSDARG00000068992, ENSDARG00000114726 813.37 6096.60 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
14. pcna ENSDARG00000054155 792.43 5939.64 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
15. eef2b ENSDARG00000100371, ENSDARG00000109247 769.72 5769.42 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
16. mt-co3 ENSDARG00000063912 727.99 5456.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. id1 ENSDARG00000040764 722.39 5414.66 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
18. fabp3 ENSDARG00000023290 696.01 5216.93 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
19. tmsb4x ENSDARG00000077777 616.06 4617.66 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 612.39 4590.16 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. pabpc1a ENSDARG00000017219 607.27 4551.78 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
22. AL954137.2 ENSDARG00000114408 595.12 4460.71
23. mt-atp6 ENSDARG00000063911 581.85 4361.24 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
24. hmgn2 ENSDARG00000099572 532.92 3994.49 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
25. rpl18a ENSDARG00000025073 514.21 3854.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. rpl8 ENSDARG00000014867 506.70 3797.96 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
27. rpl23 ENSDARG00000053457 503.02 3770.38 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
28. hsp90ab1 ENSDARG00000029150 499.18 3741.59 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
29. btf3 ENSDARG00000035400, ENSDARG00000116462 474.40 3555.85 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
30. zgc:123194 zgc:123194 444.02 3328.14
31. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 442.58 3317.35 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
32. rpl26 ENSDARG00000102317 433.31 3247.87 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
33. rps23 ENSDARG00000021838 405.81 3041.74 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
34. hnrnpab hnrnpab 405.01 3035.74
35. cirbp cirbp 402.13 3014.16
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 400.37 3000.96 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. rps14 ENSDARG00000036629 399.57 2994.97 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
38. rpl36a ENSDARG00000058105, ENSDARG00000112656 395.41 2963.79 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
39. rpl21 ENSDARG00000010516, ENSDARG00000110263 374.79 2809.23 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
40. rps26l ENSDARG00000030408 370.47 2776.85 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
41. eif5a ENSDARG00000017235 370.31 2775.65 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
42. rpl11 ENSDARG00000043509 366.47 2746.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
43. mt-nd1 ENSDARG00000063895 364.71 2733.68 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
44. rpl19 ENSDARG00000013307 361.04 2706.17 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
45. rplp1 ENSDARG00000021864 343.61 2575.52 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
46. rpl15 ENSDARG00000009285 336.09 2519.16 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
47. rpsa ENSDARG00000019181 331.78 2486.85 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
48. h3f3a 325.54 2440.08 H3 histone, family 3A, transcript variant X1
49. cfl1 ENSDARG00000021124 322.66 2418.49 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
50. mt-cyb ENSDARG00000063924 320.26 2400.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
51. actb1 ENSDARG00000037746, ENSDARG00000113649 319.62 2395.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
52. si:ch1073-429i10.3 318.98 2390.91 si:ch1073-429i10.3, transcript variant X2
53. ran ENSDARG00000057026 311.47 2334.62 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
54. rps2 ENSDARG00000077291 310.67 2328.62 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
55. rps6 ENSDARG00000019778 305.55 2290.24 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
56. rps29 ENSDARG00000041232 303.48 2274.73 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
57. rps27a ENSDARG00000032725, ENSDARG00000114059 303.32 2273.53 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
58. si:dkeyp-86f7.3 si:dkeyp-86f7.3 294.52 2207.57
59. khdrbs1a ENSDARG00000052856 292.92 2195.58 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
60. rpl5b ENSDARG00000015862, ENSDARG00000109661 289.40 2169.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
61. rplp0 ENSDARG00000051783 288.45 2162.07 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
62. rps9 ENSDARG00000011405, ENSDARG00000113248 286.53 2147.68 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
63. rps4x ENSDARG00000014690 286.05 2144.08 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
64. rpl36 ENSDARG00000100588 285.73 2141.68 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
65. rpl27 ENSDARG00000015128 285.09 2136.89 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. rps27.1 ENSDARG00000023298 279.65 2096.11 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
67. rps15a ENSDARG00000010160 276.61 2073.32 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
68. rps10 ENSDARG00000034897 270.22 2025.43 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
69. rps15 ENSDARG00000070849, ENSDARG00000110979 270.06 2024.23 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
70. rpl18 ENSDARG00000029533 266.86 2000.24 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
71. rps3 ENSDARG00000103007 263.34 1973.86 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
72. rpl7 ENSDARG00000007320 260.46 1952.27 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
73. seta ENSDARG00000031495 251.03 1881.59 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
74. rps20 ENSDARG00000036044 250.71 1879.19 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
75. marcksb ENSDARG00000008803 247.03 1851.61 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
76. rps5 ENSDARG00000043453 246.39 1846.81 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
77. rps19 ENSDARG00000030602 239.36 1794.12 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
78. pnrc2 ENSDARG00000053291, ENSDARG00000112537 238.88 1790.52 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
79. rps12 ENSDARG00000036875, ENSDARG00000115157 231.36 1734.15 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
80. gch2 ENSDARG00000099101 229.61 1721.04 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
81. h3f3d ENSDARG00000045248 227.37 1704.25 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
82. tuba8l ENSDARG00000042708 222.41 1667.07 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
83. fkbp1aa ENSDARG00000022684 217.77 1632.29 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
84. rpl6 ENSDARG00000058451 214.26 1605.98 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
85. eif5a2 ENSDARG00000056186 212.50 1592.79 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
86. rbm4.3 ENSDARG00000022129 205.62 1541.22 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
87. top1l ENSDARG00000070545 205.46 1540.02 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
88. npm1a ENSDARG00000014329, ENSDARG00000113199 203.70 1526.83 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
89. faua ENSDARG00000099022 202.10 1514.84 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. marcksl1b ENSDARG00000035715 199.87 1498.12 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
91. rps24 ENSDARG00000039347 199.23 1493.32 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
92. mt-co1 ENSDARG00000063905 197.31 1478.93 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
93. anp32a ENSDARG00000006487 194.59 1458.54 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
94. hnrnpa0a ENSDARG00000089302 191.71 1436.96 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
95. alyref ENSDARG00000077732 189.47 1420.17 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
96. tuba8l4 ENSDARG00000006260 188.35 1411.77 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
97. RPL29 ENSDARG00000077717 185.32 1389.06 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
98. tubb4b ENSDARG00000002344 184.52 1383.07 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
99. gnb2l1 180.20 1350.69 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
100. aldoaa ENSDARG00000011665 178.44 1337.49 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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