Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s57.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5486.43 41129.80
2. zgc:112425 zgc:112425 1764.05 13224.45
3. hmga1a ENSDARG00000028335 1365.78 10238.76 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1344.74 10081.03 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. ppiaa ENSDARG00000009212 1324.48 9929.15 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
6. si:dkey-151g10.6 si:dkey-151g10.6 1154.49 8654.80
7. actb2 ENSDARG00000037870 1062.72 7966.83 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. hspa8 ENSDARG00000068992, ENSDARG00000114726 963.29 7221.44 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
9. ptmab ENSDARG00000101766 936.90 7023.60 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
10. eef1a1l1 ENSDARG00000020850 933.46 6997.82 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-co2 ENSDARG00000063908 914.72 6857.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. eef2b ENSDARG00000100371, ENSDARG00000109247 798.85 5988.69 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
13. tmsb4x ENSDARG00000077777 791.97 5937.12 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
14. pcna ENSDARG00000054155 772.28 5789.51 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
15. mt-nd2 ENSDARG00000063899 752.77 5643.25 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. mt-nd4 ENSDARG00000063917 745.32 5587.40 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. mt-co3 ENSDARG00000063912 704.40 5280.63 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 638.81 4788.93 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. id1 ENSDARG00000040764 635.76 4766.07 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
20. AL954137.2 ENSDARG00000114408 607.27 4552.49
21. pabpc1a ENSDARG00000017219 585.09 4386.21 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
22. mt-atp6 ENSDARG00000063911 562.52 4217.01 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. rpl18a ENSDARG00000025073 540.73 4053.66 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. rpl23 ENSDARG00000053457 513.96 3852.97 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
25. rpl9 ENSDARG00000037350, ENSDARG00000112384 513.00 3845.78 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
26. hmgn2 ENSDARG00000099572 485.09 3636.55 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
27. rpl8 ENSDARG00000014867 484.51 3632.20 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. rpl26 ENSDARG00000102317 480.69 3603.56 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
29. hsp90ab1 ENSDARG00000029150 474.00 3553.41 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 472.08 3539.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 451.63 3385.71 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
32. zgc:123194 zgc:123194 451.43 3384.21
33. btf3 ENSDARG00000035400, ENSDARG00000116462 443.59 3325.44 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
34. rps23 ENSDARG00000021838 439.96 3298.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
35. fabp3 ENSDARG00000023290 434.80 3259.54 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
36. hnrnpab hnrnpab 406.50 3047.39
37. rpl36a ENSDARG00000058105, ENSDARG00000112656 392.54 2942.73 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
38. eif5a ENSDARG00000017235 383.94 2878.26 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
39. rps14 ENSDARG00000036629 383.37 2873.99 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
40. cirbp cirbp 362.72 2719.18
41. rpl11 ENSDARG00000043509 362.14 2714.83 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
42. rpl19 ENSDARG00000013307 351.63 2636.04 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
43. rps26l ENSDARG00000030408 349.14 2617.38 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
44. actb1 ENSDARG00000037746, ENSDARG00000113649 336.14 2519.92 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
45. rpl5b ENSDARG00000015862, ENSDARG00000109661 334.42 2507.03 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
46. ran ENSDARG00000057026 333.65 2501.25 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
47. rpsa ENSDARG00000019181 332.31 2491.21 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
48. si:ch1073-429i10.3 328.87 2465.42 si:ch1073-429i10.3, transcript variant X2
49. rpl18 ENSDARG00000029533 327.53 2455.38 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
50. rps6 ENSDARG00000019778 327.15 2452.53 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
51. rps2 ENSDARG00000077291 326.58 2448.25 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
52. mt-nd1 ENSDARG00000063895 323.52 2425.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
53. cfl1 ENSDARG00000021124 318.93 2390.90 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
54. h3f3a 317.78 2382.28 H3 histone, family 3A, transcript variant X1
55. rpl15 ENSDARG00000009285 316.44 2372.24 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 312.43 2342.18 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. rpl27 ENSDARG00000015128 310.52 2327.86 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
58. khdrbs1a ENSDARG00000052856 307.46 2304.92 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
59. mt-cyb ENSDARG00000063924 299.62 2246.14 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
60. rps15a ENSDARG00000010160 296.37 2221.78 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
61. rplp1 ENSDARG00000021864 286.42 2147.19 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
62. eif5a2 ENSDARG00000056186 286.23 2145.76 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
63. rps29 ENSDARG00000041232 278.97 2091.34 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
64. rplp0 ENSDARG00000051783 277.44 2079.87 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
65. rps10 ENSDARG00000034897 275.72 2066.97 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
66. rps27.1 ENSDARG00000023298 275.14 2062.63 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
67. si:dkeyp-86f7.3 si:dkeyp-86f7.3 274.19 2055.50
68. rps9 ENSDARG00000011405, ENSDARG00000113248 272.08 2039.69 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
69. h3f3d ENSDARG00000045248 271.89 2038.26 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
70. rps4x ENSDARG00000014690 269.98 2023.94 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
71. rps15 ENSDARG00000070849, ENSDARG00000110979 261.95 1963.75 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
72. marcksb ENSDARG00000008803 257.74 1932.18 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
73. rpl36 ENSDARG00000100588 257.17 1927.91 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
74. pnrc2 ENSDARG00000053291, ENSDARG00000112537 255.07 1912.17 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
75. rps20 ENSDARG00000036044 251.43 1884.88 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. rps3 ENSDARG00000103007 251.05 1882.03 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
77. seta ENSDARG00000031495 246.46 1847.62 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
78. rps5 ENSDARG00000043453 242.26 1816.14 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
79. rps19 ENSDARG00000030602 236.71 1774.53 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
80. rpl7 ENSDARG00000007320 236.14 1770.26 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
81. rpl6 ENSDARG00000058451 227.92 1708.63 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
82. faua ENSDARG00000099022 227.34 1704.29 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
83. npm1a ENSDARG00000014329, ENSDARG00000113199 226.39 1697.16 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
84. hnrnpa0a ENSDARG00000089302 220.27 1651.29 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
85. top1l ENSDARG00000070545 219.89 1648.44 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
86. marcksl1b ENSDARG00000035715 216.63 1624.00 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
87. rps24 ENSDARG00000039347 212.81 1595.36 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
88. rps12 ENSDARG00000036875, ENSDARG00000115157 212.43 1592.51 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
89. fkbp1aa ENSDARG00000022684 211.66 1586.74 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
90. rpl17 ENSDARG00000057556 206.12 1545.21 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
91. rpl39 ENSDARG00000036316, ENSDARG00000117167 202.29 1516.50 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
92. RPL29 ENSDARG00000077717 201.91 1513.65 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. tuba8l ENSDARG00000042708 201.34 1509.37 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
94. alyref ENSDARG00000077732 200.38 1502.18 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
95. ddx5 ENSDARG00000038068 199.24 1493.63 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
96. tuba8l4 ENSDARG00000006260 191.40 1434.86 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
97. rbm4.3 ENSDARG00000022129 190.06 1424.81 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
98. rpl14 ENSDARG00000103433 189.87 1423.39 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
99. krt8 ENSDARG00000058358, ENSDARG00000109279 187.57 1406.15 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
100. mt-co1 ENSDARG00000063905 186.04 1394.68 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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