Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s56.

Sample reads: 133,410. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8890.65 66641.38
2. zgc:112425 zgc:112425 1660.82 12448.96
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1605.50 12034.30 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. si:dkey-151g10.6 si:dkey-151g10.6 1306.40 9792.34
5. hmga1a ENSDARG00000028335 1292.35 9687.03 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
6. actb2 ENSDARG00000037870 1157.07 8673.02 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. ppiaa ENSDARG00000009212 1117.73 8378.14 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. mt-nd2 ENSDARG00000063899 1002.11 7511.49 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
9. hspa8 ENSDARG00000068992, ENSDARG00000114726 936.42 7019.10 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
10. tmsb4x ENSDARG00000077777 905.51 6787.40 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. mt-co2 ENSDARG00000063908 882.82 6617.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. ptmab ENSDARG00000101766 879.58 6593.04 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
13. mt-nd4 ENSDARG00000063917 852.78 6392.16 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. eef1a1l1 ENSDARG00000020850 834.63 6256.11 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. pcna ENSDARG00000054155 750.99 5629.17 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
16. mt-co3 ENSDARG00000063912 724.41 5429.94 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. eef2b ENSDARG00000100371, ENSDARG00000109247 703.45 5272.83 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 675.78 5065.42 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. id1 ENSDARG00000040764 628.24 4709.08 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
20. mt-atp6 ENSDARG00000063911 617.65 4629.70 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. AL954137.2 ENSDARG00000114408 614.41 4605.41
22. pabpc1a ENSDARG00000017219 523.42 3923.38 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
23. rpl21 ENSDARG00000010516, ENSDARG00000110263 495.11 3711.18 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
24. rpl8 ENSDARG00000014867 486.90 3649.64 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
25. hmgn2 ENSDARG00000099572 473.29 3547.63 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
26. rpl26 ENSDARG00000102317 473.07 3545.98 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
27. rpl23 ENSDARG00000053457 465.94 3492.53 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
28. btf3 ENSDARG00000035400, ENSDARG00000116462 463.13 3471.47 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
29. rpl18a ENSDARG00000025073 456.86 3424.47 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. rps23 ENSDARG00000021838 440.01 3298.17 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
31. rpl9 ENSDARG00000037350, ENSDARG00000112384 436.76 3273.81 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
32. hsp90ab1 ENSDARG00000029150 436.12 3269.01 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
33. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 417.53 3129.67 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
34. zgc:123194 zgc:123194 416.45 3121.57
35. mt-nd1 ENSDARG00000063895 384.03 2878.56 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
36. hnrnpab hnrnpab 379.06 2841.31
37. rps14 ENSDARG00000036629 374.96 2810.58 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
38. rpl36a ENSDARG00000058105, ENSDARG00000112656 369.12 2766.80 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
39. rps26l ENSDARG00000030408 366.53 2747.39 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 365.45 2739.29 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. rps27a ENSDARG00000032725, ENSDARG00000114059 361.12 2706.84 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
42. cirbp cirbp 360.91 2705.26
43. fabp3 ENSDARG00000023290 356.37 2671.23 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
44. eif5a ENSDARG00000017235 352.70 2643.72 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
45. rpl11 ENSDARG00000043509 351.40 2633.98 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
46. rpl15 ENSDARG00000009285 335.62 2515.70 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
47. h3f3a 334.11 2504.38 H3 histone, family 3A, transcript variant X1
48. rpl19 ENSDARG00000013307 322.22 2415.25 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
49. rplp1 ENSDARG00000021864 321.36 2408.81 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. rpl27 ENSDARG00000015128 321.14 2407.16 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
51. si:ch1073-429i10.3 321.14 2407.16 si:ch1073-429i10.3, transcript variant X2
52. rpsa ENSDARG00000019181 319.41 2394.19 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
53. rps2 ENSDARG00000077291 318.77 2389.39 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
54. rps29 ENSDARG00000041232 316.60 2373.13 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
55. mt-cyb ENSDARG00000063924 310.99 2331.08 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
56. ran ENSDARG00000057026 309.47 2319.69 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
57. rplp0 ENSDARG00000051783 300.40 2251.70 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
58. rps9 ENSDARG00000011405, ENSDARG00000113248 295.43 2214.45 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
59. cfl1 ENSDARG00000021124 291.32 2183.64 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
60. rps15a ENSDARG00000010160 282.68 2118.88 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
61. rps6 ENSDARG00000019778 280.51 2102.61 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
62. rps10 ENSDARG00000034897 278.14 2084.85 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
63. rpl36 ENSDARG00000100588 274.68 2058.91 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. faua ENSDARG00000099022 273.81 2052.39 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
65. si:dkeyp-86f7.3 si:dkeyp-86f7.3 273.81 2052.39
66. rps15 ENSDARG00000070849, ENSDARG00000110979 270.36 2026.53 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. rpl18 ENSDARG00000029533 266.03 1994.07 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
68. khdrbs1a ENSDARG00000052856 261.93 1963.34 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
69. rpl5b ENSDARG00000015862, ENSDARG00000109661 260.85 1955.25 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
70. rps12 ENSDARG00000036875, ENSDARG00000115157 257.17 1927.66 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
71. aldoaa ENSDARG00000011665 256.74 1924.44 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
72. rps20 ENSDARG00000036044 256.53 1922.86 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
73. pnrc2 ENSDARG00000053291, ENSDARG00000112537 255.45 1914.77 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
74. marcksb ENSDARG00000008803 251.34 1883.96 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
75. rps19 ENSDARG00000030602 250.91 1880.74 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
76. rps4x ENSDARG00000014690 250.69 1879.09 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
77. rps5 ENSDARG00000043453 247.88 1858.03 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
78. eif5a2 ENSDARG00000056186 244.86 1835.39 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
79. rps27.1 ENSDARG00000023298 240.97 1806.23 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. rps3 ENSDARG00000103007 236.21 1770.55 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
81. h3f3d ENSDARG00000045248 235.56 1765.68 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
82. rpl7 ENSDARG00000007320 226.92 1700.92 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
83. npm1a ENSDARG00000014329, ENSDARG00000113199 226.27 1696.05 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
84. rpl6 ENSDARG00000058451 226.05 1694.40 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
85. seta ENSDARG00000031495 223.68 1676.63 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
86. fkbp1aa ENSDARG00000022684 222.60 1668.54 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
87. rpl39 ENSDARG00000036316, ENSDARG00000117167 219.14 1642.60 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
88. RPL29 ENSDARG00000077717 213.52 1600.48 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
89. rpl17 ENSDARG00000057556 209.63 1571.32 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
90. top1l ENSDARG00000070545 204.66 1534.06 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
91. tuba8l ENSDARG00000042708 198.61 1488.72 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
92. tuba8l4 ENSDARG00000006260 195.58 1466.00 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
93. marcksl1b ENSDARG00000035715 194.72 1459.56 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
94. rpl14 ENSDARG00000103433 189.53 1420.65 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
95. rps13 ENSDARG00000036298, ENSDARG00000112818 188.67 1414.21 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
96. hnrnpa0a ENSDARG00000089302 187.37 1404.46 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
97. alyref ENSDARG00000077732 186.07 1394.72 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 183.26 1373.66 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. rpl24 ENSDARG00000099104 180.45 1352.59 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
100. rps24 ENSDARG00000039347 179.81 1347.80 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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