Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s54.

Sample reads: 133,417. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15426.99 115629.71
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1749.85 13115.63 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1446.72 10843.58
4. hmga1a ENSDARG00000028335 1166.85 8745.88 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. ppiaa ENSDARG00000009212 1108.08 8305.38 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
6. actb2 ENSDARG00000037870 1022.18 7661.53 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. si:dkey-151g10.6 si:dkey-151g10.6 889.78 6669.16
8. eef1a1l1 ENSDARG00000020850 817.01 6123.72 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. mt-nd4 ENSDARG00000063917 809.48 6067.28 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. mt-nd2 ENSDARG00000063899 807.97 6055.97 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. hspa8 ENSDARG00000068992, ENSDARG00000114726 801.51 6007.55 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
12. eef2b ENSDARG00000100371, ENSDARG00000109247 737.57 5528.30 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
13. ptmab ENSDARG00000101766 719.27 5391.13 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
14. tmsb4x ENSDARG00000077777 683.75 5124.90 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. mt-co2 ENSDARG00000063908 675.57 5063.59 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
16. id1 ENSDARG00000040764 614.00 4602.11 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
17. pabpc1a ENSDARG00000017219 602.16 4513.36 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
18. mt-co3 ENSDARG00000063912 584.07 4377.77 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 577.40 4327.78 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. AL954137.2 ENSDARG00000114408 536.28 4019.57
21. pcna ENSDARG00000054155 527.24 3951.81 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
22. mt-atp6 ENSDARG00000063911 477.72 3580.65 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. rpl18a ENSDARG00000025073 449.52 3369.28 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. rpl8 ENSDARG00000014867 423.47 3174.03 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
25. btf3 ENSDARG00000035400, ENSDARG00000116462 413.35 3098.18 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
26. hmgn2 ENSDARG00000099572 407.11 3051.41 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
27. hsp90ab1 ENSDARG00000029150 402.59 3017.53 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
28. rpl23 ENSDARG00000053457 395.05 2961.01 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
29. rpl26 ENSDARG00000102317 391.18 2932.01 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
30. mt-nd1 ENSDARG00000063895 368.57 2762.54 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 359.10 2691.56 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 354.58 2657.68 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
33. rpl36a ENSDARG00000058105, ENSDARG00000112656 346.40 2596.37 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
34. rps26l ENSDARG00000030408 342.95 2570.51 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
35. fabp3 ENSDARG00000023290 342.74 2568.93 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
36. zgc:123194 zgc:123194 340.58 2552.74
37. actb1 ENSDARG00000037746, ENSDARG00000113649 338.43 2536.63 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. cirbp cirbp 330.25 2475.32
39. rpl11 ENSDARG00000043509 330.25 2475.32 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
40. rpl9 ENSDARG00000037350, ENSDARG00000112384 328.31 2460.78 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
41. rps23 ENSDARG00000021838 328.10 2459.20 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. rps14 ENSDARG00000036629 325.94 2443.01 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
43. mt-cyb ENSDARG00000063924 316.26 2370.46 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
44. eif5a ENSDARG00000017235 312.81 2344.60 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
45. hnrnpab hnrnpab 307.00 2301.05
46. rpl19 ENSDARG00000013307 299.46 2244.54 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. rpl15 ENSDARG00000009285 299.25 2242.96 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
48. si:ch1073-429i10.3 293.87 2202.64 si:ch1073-429i10.3, transcript variant X2
49. rplp1 ENSDARG00000021864 279.01 2091.26 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. cfl1 ENSDARG00000021124 276.00 2068.70 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
51. rps27.1 ENSDARG00000023298 272.34 2041.27 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
52. pnrc2 ENSDARG00000053291, ENSDARG00000112537 271.91 2038.04 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
53. rps2 ENSDARG00000077291 267.82 2007.39 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
54. si:dkeyp-86f7.3 si:dkeyp-86f7.3 267.60 2005.74
55. rps4x ENSDARG00000014690 267.39 2004.16 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
56. rpl5b ENSDARG00000015862, ENSDARG00000109661 263.73 1976.73 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
57. rps27a ENSDARG00000032725, ENSDARG00000114059 263.08 1971.86 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
58. rpl36 ENSDARG00000100588 262.43 1966.99 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. h3f3a 261.57 1960.54 H3 histone, family 3A, transcript variant X1
60. rplp0 ENSDARG00000051783 260.07 1949.30 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
61. hbbe3 ENSDARG00000038147, ENSDARG00000109344 258.56 1937.98 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
62. rpsa ENSDARG00000019181 251.45 1884.69 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
63. ran ENSDARG00000057026 251.24 1883.12 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
64. rps6 ENSDARG00000019778 248.87 1865.35 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
65. apoa1b ENSDARG00000101324 243.06 1821.80 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
66. rps9 ENSDARG00000011405, ENSDARG00000113248 242.84 1820.16 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
67. tuba8l ENSDARG00000042708 234.02 1754.05 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
68. rpl7 ENSDARG00000007320 231.43 1734.63 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. khdrbs1a ENSDARG00000052856 229.71 1721.74 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
70. rpl27 ENSDARG00000015128 226.27 1695.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. rps5 ENSDARG00000043453 216.58 1623.33 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
72. rps29 ENSDARG00000041232 215.93 1618.46 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
73. rps10 ENSDARG00000034897 215.72 1616.88 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
74. rps15 ENSDARG00000070849, ENSDARG00000110979 210.98 1581.36 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
75. rpl18 ENSDARG00000029533 209.47 1570.04 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
76. rps19 ENSDARG00000030602 208.40 1562.02 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
77. zgc:161979_1 zgc:161979_1 207.75 1557.15
78. rps20 ENSDARG00000036044 204.31 1531.36 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
79. rps15a ENSDARG00000010160 202.58 1518.40 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
80. eif5a2 ENSDARG00000056186 201.08 1507.15 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
81. krt8 ENSDARG00000058358, ENSDARG00000109279 199.57 1495.83 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
82. npm1a ENSDARG00000014329, ENSDARG00000113199 197.42 1479.72 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
83. h3f3d ENSDARG00000045248 187.73 1407.09 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
84. rpl6 ENSDARG00000058451 187.51 1405.44 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
85. seta ENSDARG00000031495 186.65 1399.00 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
86. apobb apobb 184.93 1386.10
87. RPL29 ENSDARG00000077717 183.42 1374.79 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
88. marcksb ENSDARG00000008803 182.56 1368.34 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
89. rps12 ENSDARG00000036875, ENSDARG00000115157 181.49 1360.32 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
90. top1l ENSDARG00000070545 179.98 1349.00 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
91. fkbp1aa ENSDARG00000022684 179.33 1344.13 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
92. hbae3 ENSDARG00000079305 179.12 1342.56 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
93. apoc1l apoc1l 178.04 1334.46
94. rps3 ENSDARG00000103007 178.04 1334.46 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
95. tuba8l4 ENSDARG00000006260 176.32 1321.57 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
96. ppiab ENSDARG00000103994 167.92 1258.61 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
97. marcksl1b ENSDARG00000035715 165.77 1242.49 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
98. anp32a ENSDARG00000006487 164.48 1232.82 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
99. apoa2 ENSDARG00000015866 162.97 1221.51 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
100. rps13 ENSDARG00000036298, ENSDARG00000112818 159.96 1198.95 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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