Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s53.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16224.59 121628.73
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1683.32 12619.12 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1401.47 10506.21
4. tmsb4x ENSDARG00000077777 1189.64 8918.22 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. si:dkey-151g10.6 si:dkey-151g10.6 1126.34 8443.68
6. ppiaa ENSDARG00000009212 1065.51 7987.67 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
7. hmga1a ENSDARG00000028335 995.85 7465.46 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
8. mt-co2 ENSDARG00000063908 943.15 7070.39 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. actb2 ENSDARG00000037870 909.91 6821.20 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
10. mt-nd4 ENSDARG00000063917 862.52 6465.94 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-nd2 ENSDARG00000063899 852.62 6391.72 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. mt-co3 ENSDARG00000063912 821.15 6155.81 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. hspa8 ENSDARG00000068992, ENSDARG00000114726 773.76 5800.54 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
14. eef1a1l1 ENSDARG00000020850 722.48 5416.12 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. ptmab ENSDARG00000101766 657.41 4928.32 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 607.20 4551.92 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. mt-atp6 ENSDARG00000063911 543.54 4074.68 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 542.84 4069.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. pabpc1a ENSDARG00000017219 523.74 3926.25 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
20. pcna ENSDARG00000054155 523.03 3920.93 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
21. id1 ENSDARG00000040764 461.50 3459.67 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
22. rpl18a ENSDARG00000025073 457.96 3433.13 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
23. AL954137.2 ENSDARG00000114408 443.46 3324.43
24. btf3 ENSDARG00000035400, ENSDARG00000116462 421.54 3160.10 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
25. rpl26 ENSDARG00000102317 420.83 3154.78 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
26. rps23 ENSDARG00000021838 420.83 3154.78 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
27. hbbe3 ENSDARG00000038147, ENSDARG00000109344 416.59 3122.99 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
28. rps26l ENSDARG00000030408 388.30 2910.92 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
29. rpl21 ENSDARG00000010516, ENSDARG00000110263 381.58 2860.54 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
30. rpl8 ENSDARG00000014867 376.63 2823.43 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
31. rpl36a ENSDARG00000058105, ENSDARG00000112656 360.36 2701.46 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
32. zgc:123194 zgc:123194 345.15 2587.44
33. rps27a ENSDARG00000032725, ENSDARG00000114059 344.80 2584.82 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
34. rpl11 ENSDARG00000043509 343.74 2576.87 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
35. mt-nd1 ENSDARG00000063895 341.97 2563.60 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
36. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 336.31 2521.17 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
37. rps14 ENSDARG00000036629 333.48 2499.96 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
38. rpl9 ENSDARG00000037350, ENSDARG00000112384 332.42 2492.01 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
39. hsp90ab1 ENSDARG00000029150 329.24 2468.17 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
40. mt-cyb ENSDARG00000063924 317.92 2383.31 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. rpl23 ENSDARG00000053457 315.80 2367.42 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. rpl19 ENSDARG00000013307 315.09 2362.09 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
43. si:ch1073-429i10.3 299.18 2242.82 si:ch1073-429i10.3, transcript variant X2
44. rplp1 ENSDARG00000021864 297.76 2232.18 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. hbae3 ENSDARG00000079305 295.29 2213.66 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
46. rpl15 ENSDARG00000009285 294.93 2210.96 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
47. rpl36 ENSDARG00000100588 290.69 2179.18 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
48. eif5a ENSDARG00000017235 288.22 2160.66 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
49. h3f3a 282.56 2118.23 H3 histone, family 3A, transcript variant X1
50. hmgn2 ENSDARG00000099572 274.07 2054.58 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
51. rps27.1 ENSDARG00000023298 264.52 1982.99 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
52. pnrc2 ENSDARG00000053291, ENSDARG00000112537 259.22 1943.26 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
53. cfl1 ENSDARG00000021124 256.03 1919.35 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
54. actb1 ENSDARG00000037746, ENSDARG00000113649 255.68 1916.72 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
55. hnrnpab hnrnpab 252.85 1895.51
56. rps9 ENSDARG00000011405, ENSDARG00000113248 251.08 1882.24 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
57. fabp3 ENSDARG00000023290 247.90 1858.40 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
58. rps29 ENSDARG00000041232 247.90 1858.40 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
59. cirbp cirbp 246.13 1845.13
60. rps10 ENSDARG00000034897 245.07 1837.18 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
61. rps4x ENSDARG00000014690 245.07 1837.18 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
62. rpsa ENSDARG00000019181 244.36 1831.86 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
63. faua ENSDARG00000099022 244.01 1829.24 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
64. rplp0 ENSDARG00000051783 242.95 1821.29 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
65. apoa1b ENSDARG00000101324 242.60 1818.67 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
66. top1l ENSDARG00000070545 241.18 1808.02 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
67. si:dkeyp-86f7.3 si:dkeyp-86f7.3 240.83 1805.40
68. he1a 240.12 1800.08 hatching enzyme 1a, transcript variant X1
69. rps15a ENSDARG00000010160 239.06 1792.13 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
70. rpl27 ENSDARG00000015128 237.65 1781.56 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. rps20 ENSDARG00000036044 236.94 1776.24 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. zgc:161979_1 zgc:161979_1 231.28 1733.81
73. rpl5b ENSDARG00000015862, ENSDARG00000109661 226.33 1696.70 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
74. rps15 ENSDARG00000070849, ENSDARG00000110979 221.73 1662.21 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
75. ran ENSDARG00000057026 219.61 1646.32 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
76. rps2 ENSDARG00000077291 216.78 1625.11 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
77. rps6 ENSDARG00000019778 216.43 1622.48 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
78. h3f3d ENSDARG00000045248 215.01 1611.84 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
79. eif5a2 ENSDARG00000056186 212.54 1593.32 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
80. rpl18 ENSDARG00000029533 212.54 1593.32 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
81. rps3 ENSDARG00000103007 212.18 1590.62 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
82. rpl39 ENSDARG00000036316, ENSDARG00000117167 205.82 1542.94 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
83. RPL29 ENSDARG00000077717 203.70 1527.05 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
84. rps19 ENSDARG00000030602 201.93 1513.78 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 200.51 1503.14 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. khdrbs1a ENSDARG00000052856 200.16 1500.51 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
87. marcksb ENSDARG00000008803 195.92 1468.73 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
88. rps5 ENSDARG00000043453 195.92 1468.73 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
89. rpl14 ENSDARG00000103433 194.85 1460.71 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
90. seta ENSDARG00000031495 190.96 1431.54 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
91. AC024175.17 AC024175.17 183.89 1378.54
92. mt-co1 ENSDARG00000063905 181.42 1360.03 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
93. krt8 ENSDARG00000058358, ENSDARG00000109279 177.88 1333.49 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
94. rpl6 ENSDARG00000058451 177.53 1330.87 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
95. AL935210.1 ENSDARG00000088330 176.47 1322.92 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
96. zgc:161979 zgc:161979 173.64 1301.70
97. rpl17 ENSDARG00000057556 172.93 1296.38 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
98. rpl30 ENSDARG00000035871, ENSDARG00000109253 172.58 1293.76 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
99. apoc1l apoc1l 171.16 1283.11
100. hnrnpa0a ENSDARG00000089302 169.04 1267.22 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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