Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s51.

Sample reads: 133,389. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12115.63 90829.29
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2153.66 16145.71 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1255.22 9410.22
4. si:dkey-151g10.6 si:dkey-151g10.6 1171.78 8784.68
5. ppiaa ENSDARG00000009212 1032.27 7738.79 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
6. actb2 ENSDARG00000037870 980.54 7350.98 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. mt-co2 ENSDARG00000063908 938.49 7035.74 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. tmsb4x ENSDARG00000077777 937.82 7030.71 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. hmga1a ENSDARG00000028335 894.44 6705.50 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. mt-nd4 ENSDARG00000063917 882.09 6612.91 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. he1a 783.63 5874.77 hatching enzyme 1a, transcript variant X1
12. mt-nd2 ENSDARG00000063899 764.94 5734.65 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. mt-co3 ENSDARG00000063912 754.26 5654.59 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. ptmab ENSDARG00000101766 752.60 5642.14 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
15. eef1a1l1 ENSDARG00000020850 731.24 5482.01 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. hbbe3 ENSDARG00000038147, ENSDARG00000109344 701.20 5256.80 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 699.53 5244.28 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 630.45 4726.40 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 626.77 4698.81 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. ctslb ENSDARG00000039173, ENSDARG00000074306 510.96 3830.60 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
21. mt-atp6 ENSDARG00000063911 509.63 3820.63 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
22. hbae3 ENSDARG00000079305 504.96 3785.62 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
23. rpl18a ENSDARG00000025073 500.28 3750.53 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. zgc:174855 ENSDARG00000094559 490.61 3678.04 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
25. pabpc1a ENSDARG00000017219 487.60 3655.47 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
26. btf3 ENSDARG00000035400, ENSDARG00000116462 467.58 3505.39 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
27. pcna ENSDARG00000054155 452.56 3392.78 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
28. rpl8 ENSDARG00000014867 435.20 3262.64 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. apoa1b ENSDARG00000101324 431.87 3237.67 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
30. rps26l ENSDARG00000030408 417.18 3127.54 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
31. zgc:161979_1 zgc:161979_1 412.84 3095.01
32. rpl26 ENSDARG00000102317 409.51 3070.04 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 402.83 3019.96 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. id1 ENSDARG00000040764 381.80 2862.30 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
35. rps23 ENSDARG00000021838 380.14 2849.86 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 373.46 2799.78 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. rpl9 ENSDARG00000037350, ENSDARG00000112384 372.46 2792.28 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
38. tpma ENSDARG00000033683 370.79 2779.76 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
39. rps27a ENSDARG00000032725, ENSDARG00000114059 369.46 2769.79 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
40. rpl23 ENSDARG00000053457 366.79 2749.78 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
41. mt-nd1 ENSDARG00000063895 365.78 2742.20 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
42. rps14 ENSDARG00000036629 361.78 2712.22 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
43. CABZ01044814.2 CABZ01044814.2 359.78 2697.22
44. mt-cyb ENSDARG00000063924 347.43 2604.64 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
45. AL954137.2 ENSDARG00000114408 345.76 2592.12
46. rpl19 ENSDARG00000013307 343.42 2574.57 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. apoc1l apoc1l 340.09 2549.61
48. rpl11 ENSDARG00000043509 335.41 2514.52 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. apoa2 ENSDARG00000015866 333.75 2502.08 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
50. zgc:161979 zgc:161979 333.08 2497.06
51. rplp1 ENSDARG00000021864 332.08 2489.56 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. rpl15 ENSDARG00000009285 319.39 2394.42 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
53. actb1 ENSDARG00000037746, ENSDARG00000113649 316.06 2369.46 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
54. eif5a ENSDARG00000017235 311.72 2336.92 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. AL935210.1 ENSDARG00000088330 304.38 2281.90 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
56. si:ch1073-429i10.3 302.71 2269.38 si:ch1073-429i10.3, transcript variant X2
57. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 300.37 2251.83 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
58. hmgn2 ENSDARG00000099572 298.37 2236.84 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
59. hsp90ab1 ENSDARG00000029150 298.03 2234.29 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
60. apobb apobb 296.03 2219.30
61. rpl36 ENSDARG00000100588 291.36 2184.29 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. zgc:123194 zgc:123194 287.35 2154.23
63. rps27.1 ENSDARG00000023298 285.35 2139.23 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
64. rplp0 ENSDARG00000051783 285.02 2136.76 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
65. cirbp cirbp 282.35 2116.74
66. rps3 ENSDARG00000103007 279.68 2096.72 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
67. rps29 ENSDARG00000041232 279.01 2091.70 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
68. rps10 ENSDARG00000034897 278.68 2089.23 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
69. wu:fa26c03 278.68 2089.23 wu:fa26c03
70. rps9 ENSDARG00000011405, ENSDARG00000113248 275.01 2061.71 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
71. rps20 ENSDARG00000036044 273.34 2049.19 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. wu:fb37b09 wu:fb37b09 272.67 2044.17
73. rps2 ENSDARG00000077291 272.34 2041.70 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
74. h3f3a 267.33 2004.14 H3 histone, family 3A, transcript variant X1
75. apoa1a ENSDARG00000012076, ENSDARG00000110395 260.99 1956.61 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
76. rps4x ENSDARG00000014690 256.65 1924.07 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
77. rps6 ENSDARG00000019778 256.65 1924.07 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
78. hnrnpab hnrnpab 255.98 1919.05
79. fabp3 ENSDARG00000023290 251.98 1889.06 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
80. si:dkey-269i1.3 248.64 1864.02 si:dkey-269i1.3
81. rpsa ENSDARG00000019181 246.64 1849.03 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. ran ENSDARG00000057026 243.63 1826.46 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
83. cfl1 ENSDARG00000021124 243.30 1823.99 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
84. rps15 ENSDARG00000070849, ENSDARG00000110979 242.63 1818.97 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
85. rpl27 ENSDARG00000015128 241.97 1814.02 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
86. rps15a ENSDARG00000010160 241.97 1814.02 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. rpl5b ENSDARG00000015862, ENSDARG00000109661 241.30 1808.99 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
88. ckma ENSDARG00000035327, ENSDARG00000114671 236.29 1771.44 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
89. atp2a1 ENSDARG00000020574 235.62 1766.41 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
90. si:dkey-239j18.3 ENSDARG00000089806 225.95 1693.92 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
91. apoeb ENSDARG00000040295 223.28 1673.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
92. rps12 ENSDARG00000036875, ENSDARG00000115157 220.27 1651.34 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
93. RPL29 ENSDARG00000077717 219.27 1643.84 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
94. rps19 ENSDARG00000030602 217.60 1631.32 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
95. rpl7 ENSDARG00000007320 214.93 1611.30 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
96. hbae1_1 213.60 1601.33 hemoglobin, alpha embryonic 1
97. rpl18 ENSDARG00000029533 208.26 1561.30 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
98. zgc:174153 ENSDARG00000079376 205.92 1543.76 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
99. krt8 ENSDARG00000058358, ENSDARG00000109279 205.25 1538.73 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
100. h3f3d ENSDARG00000045248 201.58 1511.22 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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