Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s50.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8988.98 67382.34
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2473.02 18538.02 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. si:dkey-151g10.6 si:dkey-151g10.6 1483.45 11120.10
4. zgc:112425 zgc:112425 1123.57 8422.40
5. mt-co2 ENSDARG00000063908 1095.95 8215.36 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ppiaa ENSDARG00000009212 1095.50 8211.98 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
7. he1a 990.02 7421.29 hatching enzyme 1a, transcript variant X1
8. actb2 ENSDARG00000037870 923.93 6925.88 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. hbbe3 ENSDARG00000038147, ENSDARG00000109344 847.88 6355.80 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
10. hmga1a ENSDARG00000028335 832.94 6243.81 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. mt-nd2 ENSDARG00000063899 800.80 6002.88 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. tmsb4x ENSDARG00000077777 782.69 5867.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mt-nd4 ENSDARG00000063917 781.34 5857.01 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. ptmab ENSDARG00000101766 765.49 5738.19 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
15. rpl10a ENSDARG00000042905, ENSDARG00000115649 747.84 5605.89 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
16. eef1a1l1 ENSDARG00000020850 733.80 5500.64 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mt-co3 ENSDARG00000063912 696.23 5219.01 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 683.56 5124.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. ctslb ENSDARG00000039173, ENSDARG00000074306 656.39 4920.37 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
20. zgc:174855 ENSDARG00000094559 626.97 4699.83 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
21. eef2b ENSDARG00000100371, ENSDARG00000109247 598.90 4489.42 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
22. mt-atp6 ENSDARG00000063911 588.49 4411.38 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. rpl8 ENSDARG00000014867 536.89 4024.58 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. zgc:161979_1 zgc:161979_1 523.76 3926.16
25. hbae3 ENSDARG00000079305 520.14 3899.02 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
26. apoa1b ENSDARG00000101324 517.87 3882.01 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. pcna ENSDARG00000054155 511.99 3837.93 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
28. rpl18a ENSDARG00000025073 502.93 3770.02 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
29. rpl26 ENSDARG00000102317 489.81 3671.67 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
30. rps14 ENSDARG00000036629 466.27 3495.21 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
31. rps26l ENSDARG00000030408 452.69 3393.41 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
32. btf3 ENSDARG00000035400, ENSDARG00000116462 448.61 3362.83 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
33. rpl23 ENSDARG00000053457 446.35 3345.89 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
34. id1 ENSDARG00000040764 433.22 3247.46 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
35. rps23 ENSDARG00000021838 431.41 3233.89 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. pabpc1a ENSDARG00000017219 430.96 3230.52 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
37. rpl9 ENSDARG00000037350, ENSDARG00000112384 426.88 3199.94 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
38. rpl21 ENSDARG00000010516, ENSDARG00000110263 421.45 3159.23 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
39. rpl36a ENSDARG00000058105, ENSDARG00000112656 416.47 3121.90 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
40. apoc1l apoc1l 411.04 3081.20
41. CABZ01044814.2 CABZ01044814.2 401.53 3009.91
42. zgc:161979 zgc:161979 397.46 2979.40
43. rpl11 ENSDARG00000043509 365.32 2738.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
44. rps29 ENSDARG00000041232 359.89 2697.77 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
45. apoa2 ENSDARG00000015866 358.53 2687.58 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 357.62 2680.76 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. AL954137.2 ENSDARG00000114408 357.17 2677.38
48. rplp1 ENSDARG00000021864 355.81 2667.19 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
49. wu:fa26c03 352.64 2643.43 wu:fa26c03
50. rpl19 ENSDARG00000013307 351.74 2636.68 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
51. apobb apobb 350.38 2626.49
52. tpma ENSDARG00000033683 340.87 2555.20 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
53. rps27.1 ENSDARG00000023298 332.27 2490.73 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
54. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 330.01 2473.79 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
55. mt-nd1 ENSDARG00000063895 328.20 2460.22 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
56. rps20 ENSDARG00000036044 326.39 2446.65 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
57. rps3 ENSDARG00000103007 322.31 2416.07 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
58. wu:fb37b09 wu:fb37b09 319.14 2392.31
59. eif5a ENSDARG00000017235 317.79 2382.19 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
60. si:ch1073-429i10.3 315.52 2365.17 si:ch1073-429i10.3, transcript variant X2
61. fabp3 ENSDARG00000023290 311.00 2331.29 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
62. hsp90ab1 ENSDARG00000029150 310.54 2327.84 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
63. rpl15 ENSDARG00000009285 309.64 2321.09 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
64. rps10 ENSDARG00000034897 306.47 2297.33 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
65. rpl27 ENSDARG00000015128 305.56 2290.51 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. mt-cyb ENSDARG00000063924 304.20 2280.32 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
67. rps15 ENSDARG00000070849, ENSDARG00000110979 299.23 2243.06 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
68. apoa1a ENSDARG00000012076, ENSDARG00000110395 297.41 2229.42 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
69. rpl36 ENSDARG00000100588 295.60 2215.85 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
70. rps2 ENSDARG00000077291 291.98 2188.71 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
71. faua ENSDARG00000099022 291.53 2185.34 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
72. rplp0 ENSDARG00000051783 291.08 2181.97 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
73. actb1 ENSDARG00000037746, ENSDARG00000113649 287.91 2158.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
74. rpl18 ENSDARG00000029533 285.19 2137.81 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
75. si:dkey-269i1.3 283.38 2124.25 si:dkey-269i1.3
76. rps6 ENSDARG00000019778 282.48 2117.50 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
77. hnrnpab hnrnpab 282.02 2114.05
78. rps15a ENSDARG00000010160 278.85 2090.29 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
79. h3f3a 277.95 2083.54 H3 histone, family 3A, transcript variant X1
80. zgc:174153 ENSDARG00000079376 276.14 2069.97 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
81. rpsa ENSDARG00000019181 275.69 2066.60 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. si:dkeyp-86f7.3 si:dkeyp-86f7.3 274.33 2056.41
83. rps4x ENSDARG00000014690 272.06 2039.39 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. rps9 ENSDARG00000011405, ENSDARG00000113248 270.71 2029.27 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
85. apoeb ENSDARG00000040295 267.99 2008.88 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
86. hmgn2 ENSDARG00000099572 267.99 2008.88 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
87. cirbp cirbp 263.46 1974.92
88. rps12 ENSDARG00000036875, ENSDARG00000115157 263.46 1974.92 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
89. si:dkey-239j18.3 ENSDARG00000089806 256.67 1924.03 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
90. AL935210.1 ENSDARG00000088330 255.31 1913.83 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
91. zgc:123194 zgc:123194 255.31 1913.83
92. rps5 ENSDARG00000043453 250.79 1879.95 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 246.26 1845.99 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rps19 ENSDARG00000030602 241.28 1808.66 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
95. RPL29 ENSDARG00000077717 232.23 1740.82 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
96. h3f3d ENSDARG00000045248 231.32 1734.00 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
97. ckma ENSDARG00000035327, ENSDARG00000114671 229.06 1717.06 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
98. rpl39 ENSDARG00000036316, ENSDARG00000117167 227.25 1703.49 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
99. hbbe1.1 ENSDARG00000113599 225.44 1689.92 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
100. rpl17 ENSDARG00000057556 225.44 1689.92 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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