Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s5.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23638.04 177188.79
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4954.86 37141.22 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. si:dkey-151g10.6 si:dkey-151g10.6 1374.91 10306.21
4. tmsb4x ENSDARG00000077777 1323.02 9917.25 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. actb2 ENSDARG00000037870 1229.63 9217.20 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. eef1a1l1 ENSDARG00000020850 1016.91 7622.67 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
7. efemp2a ENSDARG00000094324 907.96 6805.99 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
8. ppiaa ENSDARG00000009212 835.32 6261.49 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. mt-co2 ENSDARG00000063908 726.37 5444.81 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. actb1 ENSDARG00000037746, ENSDARG00000113649 710.80 5328.10 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
11. apoc1l apoc1l 674.48 5055.85
12. mt-nd2 ENSDARG00000063899 648.54 4861.40 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
13. zgc:112425 zgc:112425 638.16 4783.59
14. mt-co3 ENSDARG00000063912 612.22 4589.15 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. mt-nd4 ENSDARG00000063917 596.66 4472.51 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. rpl10a ENSDARG00000042905, ENSDARG00000115649 581.09 4355.80 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 575.90 4316.90 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 549.96 4122.45 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. hmga1a ENSDARG00000028335 549.96 4122.45 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
20. id1 ENSDARG00000040764 549.96 4122.45 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
21. rpl18a ENSDARG00000025073 508.46 3811.37 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
22. rpl23 ENSDARG00000053457 456.57 3422.41 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. rpl8 ENSDARG00000014867 451.38 3383.51 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. ptmab ENSDARG00000101766 435.82 3266.87 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
25. rpl26 ENSDARG00000102317 430.63 3227.97 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
26. rpl9 ENSDARG00000037350, ENSDARG00000112384 415.07 3111.33 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
27. pabpc1a ENSDARG00000017219 383.94 2877.98 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
28. mt-atp6 ENSDARG00000063911 378.75 2839.08 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
29. rpl36 ENSDARG00000100588 378.75 2839.08 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
30. cfl1l ENSDARG00000012972 368.37 2761.27 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 368.37 2761.27 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. btf3 ENSDARG00000035400, ENSDARG00000116462 357.99 2683.46 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
33. rps12 ENSDARG00000036875, ENSDARG00000115157 357.99 2683.46 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
34. rps27a ENSDARG00000032725, ENSDARG00000114059 347.62 2605.73 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
35. rpl27 ENSDARG00000015128 342.43 2566.83 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
36. rpl11 ENSDARG00000043509 337.24 2527.92 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
37. rpl36a ENSDARG00000058105, ENSDARG00000112656 337.24 2527.92 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
38. rps15a ENSDARG00000010160 332.05 2489.02 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
39. rps15 ENSDARG00000070849, ENSDARG00000110979 326.86 2450.12 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
40. apoeb ENSDARG00000040295 321.68 2411.29 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
41. rpl15 ENSDARG00000009285 321.68 2411.29 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
42. rps14 ENSDARG00000036629 321.68 2411.29 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
43. rps23 ENSDARG00000021838 321.68 2411.29 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. rpl7 ENSDARG00000007320 316.49 2372.38 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
45. AL954137.2 ENSDARG00000114408 311.30 2333.48
46. rpl19 ENSDARG00000013307 306.11 2294.58 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. rps27.1 ENSDARG00000023298 306.11 2294.58 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
48. RPL29 ENSDARG00000077717 295.73 2216.77 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
49. rpl5b ENSDARG00000015862, ENSDARG00000109661 295.73 2216.77 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
50. rps10 ENSDARG00000034897 295.73 2216.77 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
51. rps24 ENSDARG00000039347 290.55 2177.94 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
52. rps29 ENSDARG00000041232 290.55 2177.94 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
53. acta1a ENSDARG00000036371 274.98 2061.23 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. bcam ENSDARG00000090190 274.98 2061.23 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
55. eif5a ENSDARG00000017235 274.98 2061.23 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
56. hmgn2 ENSDARG00000099572 269.79 2022.32 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
57. hsp90ab1 ENSDARG00000029150 269.79 2022.32 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
58. mt-cyb ENSDARG00000063924 269.79 2022.32 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
59. AC024175.17 AC024175.17 264.60 1983.42
60. pcna ENSDARG00000054155 264.60 1983.42 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
61. rps4x ENSDARG00000014690 264.60 1983.42 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
62. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 254.23 1905.69 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
63. mt-nd1 ENSDARG00000063895 249.04 1866.78 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
64. rplp1 ENSDARG00000021864 249.04 1866.78 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
65. rps19 ENSDARG00000030602 249.04 1866.78 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
66. rpl14 ENSDARG00000103433 238.66 1788.98 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
67. rps2 ENSDARG00000077291 238.66 1788.98 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
68. krt8 ENSDARG00000058358, ENSDARG00000109279 233.47 1750.07 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
69. faua ENSDARG00000099022 228.29 1711.24 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
70. col1a1a ENSDARG00000012405, ENSDARG00000116113 223.10 1672.34 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
71. rps20 ENSDARG00000036044 223.10 1672.34 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. rps26l ENSDARG00000030408 223.10 1672.34 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
73. rps6 ENSDARG00000019778 223.10 1672.34 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
74. rps5 ENSDARG00000043453 217.91 1633.44 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
75. rps9 ENSDARG00000011405, ENSDARG00000113248 217.91 1633.44 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
76. cyt1l ENSDARG00000036832 212.72 1594.53 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
77. rplp0 ENSDARG00000051783 207.53 1555.63 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
78. rps13 ENSDARG00000036298, ENSDARG00000112818 207.53 1555.63 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
79. si:ch1073-429i10.3 207.53 1555.63 si:ch1073-429i10.3, transcript variant X2
80. h3f3a 202.34 1516.72 H3 histone, family 3A, transcript variant X1
81. rpl18 ENSDARG00000029533 197.16 1477.89 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
82. rps3 ENSDARG00000103007 197.16 1477.89 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
83. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 197.16 1477.89 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
84. ran ENSDARG00000057026 191.97 1438.99 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
85. rpl17 ENSDARG00000057556 191.97 1438.99 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
86. rpl35a ENSDARG00000088030 191.97 1438.99 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
87. rpl38 ENSDARG00000006413 191.97 1438.99 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
88. si:dkey-150i13.2 ENSDARG00000071052 186.78 1400.09 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
89. si:dkeyp-86f7.3 si:dkeyp-86f7.3 186.78 1400.09
90. zgc:92533 zgc:92533 186.78 1400.09
91. hnrnpab hnrnpab 181.59 1361.18
92. gnb2l1 176.40 1322.28 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
93. rpl30 ENSDARG00000035871, ENSDARG00000109253 176.40 1322.28 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
94. rpl34 ENSDARG00000029500 176.40 1322.28 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
95. rpl39 ENSDARG00000036316, ENSDARG00000117167 176.40 1322.28 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
96. rpsa ENSDARG00000019181 176.40 1322.28 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
97. pnrc2 ENSDARG00000053291, ENSDARG00000112537 171.21 1283.38 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
98. zgc:123194 zgc:123194 171.21 1283.38
99. fkbp1aa ENSDARG00000022684 166.03 1244.55 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
100. rpl6 ENSDARG00000058451 166.03 1244.55 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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