Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s49.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8388.64 62882.92
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2893.24 21688.30 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. he1a 1422.42 10662.74 hatching enzyme 1a, transcript variant X1
4. si:dkey-151g10.6 si:dkey-151g10.6 1415.90 10613.87
5. mt-co2 ENSDARG00000063908 1228.83 9211.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. zgc:112425 zgc:112425 1202.40 9013.43
7. ppiaa ENSDARG00000009212 986.15 7392.38 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. ctslb ENSDARG00000039173, ENSDARG00000074306 974.48 7304.90 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
9. zgc:174855 ENSDARG00000094559 970.36 7274.01 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
10. actb2 ENSDARG00000037870 951.48 7132.48 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. hbbe3 ENSDARG00000038147, ENSDARG00000109344 910.64 6826.34 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
12. tmsb4x ENSDARG00000077777 879.06 6589.61 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. hmga1a ENSDARG00000028335 867.73 6504.68 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
14. mt-nd4 ENSDARG00000063917 781.92 5861.43 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. zgc:161979_1 zgc:161979_1 747.25 5601.54
16. eef1a1l1 ENSDARG00000020850 693.70 5200.11 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mt-nd2 ENSDARG00000063899 682.38 5115.26 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 675.86 5066.38 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. apoa1b ENSDARG00000101324 672.08 5038.05 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
20. mt-co3 ENSDARG00000063912 664.87 4984.00 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. zgc:161979 zgc:161979 656.98 4924.85
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 640.16 4798.77 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. apoa2 ENSDARG00000015866 583.52 4374.18 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
24. apobb apobb 580.78 4353.64
25. CABZ01044814.2 CABZ01044814.2 567.73 4255.82
26. hbae3 ENSDARG00000079305 565.33 4237.83 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
27. wu:fa26c03 563.27 4222.38 wu:fa26c03
28. rps26l ENSDARG00000030408 561.21 4206.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
29. apoc1l apoc1l 551.94 4137.45
30. ptmab ENSDARG00000101766 550.23 4124.63 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
31. eef2b ENSDARG00000100371, ENSDARG00000109247 534.09 4003.65 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
32. rps29 ENSDARG00000041232 501.83 3761.82 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
33. tpma ENSDARG00000033683 501.14 3756.65 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
34. rpl18a ENSDARG00000025073 473.34 3548.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
35. si:dkey-269i1.3 471.28 3532.81 si:dkey-269i1.3
36. rpl23 ENSDARG00000053457 465.79 3491.65 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. wu:fb37b09 wu:fb37b09 462.70 3468.49
38. mt-atp6 ENSDARG00000063911 454.46 3406.72 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
39. rpl8 ENSDARG00000014867 454.46 3406.72 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
40. rpl21 ENSDARG00000010516, ENSDARG00000110263 421.51 3159.72 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
41. si:dkey-239j18.3 ENSDARG00000089806 413.96 3103.13 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
42. rps23 ENSDARG00000021838 399.88 2997.58 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
43. rps20 ENSDARG00000036044 399.20 2992.48 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 396.79 2974.42 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. apoa1a ENSDARG00000012076, ENSDARG00000110395 390.96 2930.71 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
46. rpl36 ENSDARG00000100588 386.84 2899.83 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
47. rpl26 ENSDARG00000102317 382.38 2866.40 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
48. pcna ENSDARG00000054155 374.83 2809.80 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
49. rps14 ENSDARG00000036629 368.65 2763.47 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
50. btf3 ENSDARG00000035400, ENSDARG00000116462 363.84 2727.42 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
51. id1 ENSDARG00000040764 359.04 2691.44 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 356.29 2670.82 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. apoeb ENSDARG00000040295 350.11 2624.49 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
54. rplp1 ENSDARG00000021864 347.71 2606.50 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. zgc:174153 ENSDARG00000079376 336.73 2524.20 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
56. AL935210.1 ENSDARG00000088330 328.15 2459.88 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
57. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 326.77 2449.53 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
58. si:dkey-26g8.5 ENSDARG00000089750 322.65 2418.65 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
59. rpl11 ENSDARG00000043509 319.91 2398.11 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
60. rpl19 ENSDARG00000013307 318.88 2390.39 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
61. rps15 ENSDARG00000070849, ENSDARG00000110979 318.88 2390.39 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
62. rps27a ENSDARG00000032725, ENSDARG00000114059 316.47 2372.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. actb1 ENSDARG00000037746, ENSDARG00000113649 311.67 2336.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
64. pabpc1a ENSDARG00000017219 310.64 2328.62 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
65. mt-nd1 ENSDARG00000063895 309.27 2318.35 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
66. rpl39 ENSDARG00000036316, ENSDARG00000117167 307.89 2308.00 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
67. hbae1_1 305.15 2287.47 hemoglobin, alpha embryonic 1
68. atp2a1 ENSDARG00000020574 302.74 2269.40 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
69. hsp90ab1 ENSDARG00000029150 297.25 2228.25 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
70. rpl27 ENSDARG00000015128 295.88 2217.98 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. si:ch1073-429i10.3 292.10 2189.64 si:ch1073-429i10.3, transcript variant X2
72. eif5a ENSDARG00000017235 291.42 2184.54 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. ckma ENSDARG00000035327, ENSDARG00000114671 290.39 2176.82 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
74. RPL29 ENSDARG00000077717 289.70 2171.65 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
75. rps10 ENSDARG00000034897 288.33 2161.38 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 288.33 2161.38 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. fabp3 ENSDARG00000023290 281.46 2109.88 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
78. rpl15 ENSDARG00000009285 279.75 2097.06 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
79. mt-cyb ENSDARG00000063924 278.72 2089.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
80. zgc:153129 zgc:153129 275.97 2068.73
81. rps15a ENSDARG00000010160 275.29 2063.63 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
82. faua ENSDARG00000099022 269.45 2019.85 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
83. rps5 ENSDARG00000043453 269.45 2019.85 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
84. AL954137.2 ENSDARG00000114408 265.67 1991.52
85. hnrnpab hnrnpab 256.41 1922.10
86. ckmb ENSDARG00000040565 253.32 1898.94 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
87. h3f3d ENSDARG00000045248 253.32 1898.94 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
88. cirbp cirbp 252.63 1893.76
89. he1b 252.29 1891.22 hatching enzyme 1b
90. rpl18 ENSDARG00000029533 252.29 1891.22 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
91. rps2 ENSDARG00000077291 249.20 1868.05 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
92. rps6 ENSDARG00000019778 245.77 1842.34 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
93. h3f3a 244.39 1832.00 H3 histone, family 3A, transcript variant X1
94. hmgn2 ENSDARG00000099572 244.39 1832.00 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
95. hbbe1.1 ENSDARG00000113599 241.99 1814.01 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
96. krt8 ENSDARG00000058358, ENSDARG00000109279 238.90 1790.84 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
97. bhmt ENSDARG00000013430 238.56 1788.29 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
98. rps3 ENSDARG00000103007 237.53 1780.57 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
99. rps19 ENSDARG00000030602 236.15 1770.23 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 235.13 1762.58 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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