Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s48.

Sample reads: 133,408. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15611.14 117018.05
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3079.32 23081.98 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1403.21 10518.19 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. actb2 ENSDARG00000037870 1056.76 7921.27 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
5. si:dkey-151g10.6 si:dkey-151g10.6 1012.04 7586.05
6. mt-co2 ENSDARG00000063908 1009.00 7563.27 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. he1a 908.18 6807.54 hatching enzyme 1a, transcript variant X1
8. ppiaa ENSDARG00000009212 880.13 6597.28 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. mt-nd4 ENSDARG00000063917 874.07 6551.86 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. zgc:112425 zgc:112425 872.55 6540.46
11. mt-nd2 ENSDARG00000063899 852.84 6392.72 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. mt-co3 ENSDARG00000063912 842.23 6313.19 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. ctslb ENSDARG00000039173, ENSDARG00000074306 741.40 5557.39 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
14. eef1a1l1 ENSDARG00000020850 692.13 5188.07 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. hbbe3 ENSDARG00000038147, ENSDARG00000109344 664.08 4977.81 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
16. hmga1a ENSDARG00000028335 636.79 4773.25 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 628.45 4710.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 605.71 4540.28 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. zgc:174855 ENSDARG00000094559 583.72 4375.45 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
20. mt-atp6 ENSDARG00000063911 567.04 4250.42 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
21. apoa1b ENSDARG00000101324 551.12 4131.09 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. ptmab ENSDARG00000101766 513.22 3847.00 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
23. apoc1l apoc1l 492.75 3693.56
24. rpl10a ENSDARG00000042905, ENSDARG00000115649 485.93 3642.44 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
25. pabpc1a ENSDARG00000017219 425.28 3187.82 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
26. CABZ01044814.2 CABZ01044814.2 419.22 3142.39
27. tpma ENSDARG00000033683 410.12 3074.18 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
28. wu:fb37b09 wu:fb37b09 407.09 3051.47
29. hbae3 ENSDARG00000079305 399.51 2994.65 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
30. apobb apobb 396.48 2971.94
31. wu:fa26c03 391.17 2932.13 wu:fa26c03
32. zgc:161979_1 zgc:161979_1 388.14 2909.42
33. rpl26 ENSDARG00000102317 383.59 2875.32 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. apoa2 ENSDARG00000015866 375.25 2812.80 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
35. zgc:161979 zgc:161979 361.60 2710.48
36. rpl8 ENSDARG00000014867 358.57 2687.77 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. rpl18a ENSDARG00000025073 350.99 2630.95 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
38. mt-cyb ENSDARG00000063924 350.23 2625.26 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 347.96 2608.24 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. btf3 ENSDARG00000035400, ENSDARG00000116462 347.96 2608.24 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. rpl36a ENSDARG00000058105, ENSDARG00000112656 335.83 2517.32 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
42. rpl11 ENSDARG00000043509 330.52 2477.51 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
43. rpl23 ENSDARG00000053457 330.52 2477.51 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
44. mt-nd1 ENSDARG00000063895 318.39 2386.59 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
45. rps23 ENSDARG00000021838 318.39 2386.59 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
46. rps14 ENSDARG00000036629 314.60 2358.18 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
47. rps26l ENSDARG00000030408 314.60 2358.18 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. AL954137.2 ENSDARG00000114408 310.81 2329.77
49. pcna ENSDARG00000054155 304.75 2284.35 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
50. rpl21 ENSDARG00000010516, ENSDARG00000110263 303.99 2278.65 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
51. rplp1 ENSDARG00000021864 303.23 2272.95 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
52. apoeb ENSDARG00000040295 302.47 2267.26 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
53. rpl9 ENSDARG00000037350, ENSDARG00000112384 298.68 2238.85 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
54. si:dkey-239j18.3 ENSDARG00000089806 297.17 2227.53 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
55. ckmb ENSDARG00000040565 295.65 2216.13 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
56. apoa1a ENSDARG00000012076, ENSDARG00000110395 294.14 2204.82 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
57. id1 ENSDARG00000040764 285.80 2142.30 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
58. ckma ENSDARG00000035327, ENSDARG00000114671 284.28 2130.91 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
59. si:dkey-269i1.3 283.52 2125.21 si:dkey-269i1.3
60. eif5a ENSDARG00000017235 276.70 2074.09 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. rpl36 ENSDARG00000100588 276.70 2074.09 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. zgc:174153 ENSDARG00000079376 276.70 2074.09 zgc:174153 [Source:ZFIN;Acc:ZDB-GENE-080215-7]
63. rps27a ENSDARG00000032725, ENSDARG00000114059 273.67 2051.38 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. rpl19 ENSDARG00000013307 264.57 1983.17 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. krt8 ENSDARG00000058358, ENSDARG00000109279 262.30 1966.15 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
66. atp2a1 ENSDARG00000020574 256.99 1926.35 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
67. rpsa ENSDARG00000019181 253.20 1897.94 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
68. hsp90ab1 ENSDARG00000029150 250.17 1875.23 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
69. actc1b ENSDARG00000099197 247.13 1852.44 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
70. rps27.1 ENSDARG00000023298 244.86 1835.42 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
71. zgc:153129 zgc:153129 243.34 1824.03
72. rps15a ENSDARG00000010160 240.31 1801.32 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
73. si:ch1073-429i10.3 240.31 1801.32 si:ch1073-429i10.3, transcript variant X2
74. rpl27 ENSDARG00000015128 239.55 1795.62 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
75. rplp0 ENSDARG00000051783 237.28 1778.60 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
76. rps10 ENSDARG00000034897 237.28 1778.60 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
77. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 236.52 1772.91 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
78. rps9 ENSDARG00000011405, ENSDARG00000113248 235.76 1767.21 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
79. rps2 ENSDARG00000077291 233.49 1750.20 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. bhmt ENSDARG00000013430 229.70 1721.79 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
81. rpl15 ENSDARG00000009285 229.70 1721.79 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
82. fabp2 ENSDARG00000006427, ENSDARG00000110230 228.18 1710.39 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
83. rpl5b ENSDARG00000015862, ENSDARG00000109661 222.88 1670.66 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
84. fabp3 ENSDARG00000023290 219.84 1647.88 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
85. rps12 ENSDARG00000036875, ENSDARG00000115157 216.81 1625.17 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
86. rps29 ENSDARG00000041232 214.54 1608.15 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
87. rps20 ENSDARG00000036044 213.02 1596.76 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
88. rps3 ENSDARG00000103007 209.99 1574.04 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
89. AL935210.1 ENSDARG00000088330 207.71 1556.95 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
90. rps15 ENSDARG00000070849, ENSDARG00000110979 206.96 1551.33 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
91. cirbp cirbp 206.20 1545.63
92. si:dkey-26g8.5 ENSDARG00000089750 203.92 1528.54 si:dkey-26g8.5 [Source:ZFIN;Acc:ZDB-GENE-121214-19]
93. rps4x ENSDARG00000014690 202.41 1517.23 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
94. RPL29 ENSDARG00000077717 200.13 1500.14 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
95. hmgn2 ENSDARG00000099572 200.13 1500.14 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
96. faua ENSDARG00000099022 199.38 1494.51 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
97. cfl1 ENSDARG00000021124 198.62 1488.82 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
98. h3f3a 197.10 1477.42 H3 histone, family 3A, transcript variant X1
99. hbbe1.1 ENSDARG00000113599 197.10 1477.42 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
100. pnrc2 ENSDARG00000053291, ENSDARG00000112537 195.58 1466.03 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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