Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s4.

Sample reads: 133,404. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19537.85 146455.93
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5322.71 39899.09 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1647.81 12352.00 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. si:dkey-151g10.6 si:dkey-151g10.6 1246.22 9341.68
5. apoc1l apoc1l 1192.03 8935.47
6. actb2 ENSDARG00000037870 1144.22 8577.09 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. eef1a1l1 ENSDARG00000020850 952.99 7143.62 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. mt-co2 ENSDARG00000063908 921.12 6904.73 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. ppiaa ENSDARG00000009212 806.37 6044.56 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. mt-nd4 ENSDARG00000063917 800.00 5996.81 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-nd2 ENSDARG00000063899 774.50 5805.66 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. actb1 ENSDARG00000037746, ENSDARG00000113649 755.38 5662.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
13. efemp2a ENSDARG00000094324 755.38 5662.34 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
14. id1 ENSDARG00000040764 717.13 5375.61 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
15. hmga1a ENSDARG00000028335 627.89 4706.67 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
16. mt-co3 ENSDARG00000063912 621.51 4658.85 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 618.33 4635.01 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 599.20 4491.61 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 586.45 4396.04 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. zgc:112425 zgc:112425 551.39 4133.23
21. apoeb ENSDARG00000040295 513.15 3846.58 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
22. rpl8 ENSDARG00000014867 474.90 3559.86 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
23. rpl18a ENSDARG00000025073 458.96 3440.37 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. rpl26 ENSDARG00000102317 458.96 3440.37 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
25. rpl23 ENSDARG00000053457 439.84 3297.05 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
26. btf3 ENSDARG00000035400, ENSDARG00000116462 436.65 3273.13 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
27. ptmab ENSDARG00000101766 398.41 2986.49 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
28. pabpc1a ENSDARG00000017219 395.22 2962.57 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
29. rplp1 ENSDARG00000021864 395.22 2962.57 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
30. cfl1l ENSDARG00000012972 392.03 2938.66 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
31. rpl19 ENSDARG00000013307 385.66 2890.91 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
32. rps23 ENSDARG00000021838 385.66 2890.91 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
33. rpl36a ENSDARG00000058105, ENSDARG00000112656 382.47 2867.00 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
34. rps14 ENSDARG00000036629 379.28 2843.09 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. rpl21 ENSDARG00000010516, ENSDARG00000110263 372.91 2795.34 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
36. rps26l ENSDARG00000030408 372.91 2795.34 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
37. col1a1a ENSDARG00000012405, ENSDARG00000116113 363.35 2723.68 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
38. rpl9 ENSDARG00000037350, ENSDARG00000112384 350.60 2628.10 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
39. mt-atp6 ENSDARG00000063911 347.41 2604.19 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
40. rpl15 ENSDARG00000009285 331.47 2484.70 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
41. mt-cyb ENSDARG00000063924 328.29 2460.87 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
42. AL954137.2 ENSDARG00000114408 325.10 2436.95
43. hsp90ab1 ENSDARG00000029150 321.91 2413.04 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
44. si:ch1073-429i10.3 321.91 2413.04 si:ch1073-429i10.3, transcript variant X2
45. rpl27 ENSDARG00000015128 309.16 2317.47 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 305.98 2293.63 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. rps29 ENSDARG00000041232 299.60 2245.80 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
48. AC024175.17 AC024175.17 296.41 2221.89
49. rps12 ENSDARG00000036875, ENSDARG00000115157 296.41 2221.89 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
50. rpsa ENSDARG00000019181 296.41 2221.89 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
51. krt8 ENSDARG00000058358, ENSDARG00000109279 290.04 2174.14 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
52. rpl11 ENSDARG00000043509 283.67 2126.39 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
53. rpl36 ENSDARG00000100588 283.67 2126.39 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
54. si:dkeyp-86f7.3 si:dkeyp-86f7.3 277.29 2078.57
55. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 274.10 2054.66 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
56. rps2 ENSDARG00000077291 274.10 2054.66 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. rpl18 ENSDARG00000029533 270.92 2030.82 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
58. rps10 ENSDARG00000034897 270.92 2030.82 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
59. rps19 ENSDARG00000030602 270.92 2030.82 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
60. mt-nd1 ENSDARG00000063895 267.73 2006.91 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
61. rpl5b ENSDARG00000015862, ENSDARG00000109661 267.73 2006.91 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
62. bcam ENSDARG00000090190 264.54 1982.99 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 264.54 1982.99 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. rpl7 ENSDARG00000007320 251.79 1887.42 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
65. si:dkey-150i13.2 ENSDARG00000071052 251.79 1887.42 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
66. rps15 ENSDARG00000070849, ENSDARG00000110979 248.61 1863.58 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. rps27.1 ENSDARG00000023298 245.42 1839.67 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
68. rps3 ENSDARG00000103007 245.42 1839.67 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
69. rpl39 ENSDARG00000036316, ENSDARG00000117167 242.23 1815.76 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
70. rps15a ENSDARG00000010160 239.04 1791.85 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
71. pcna ENSDARG00000054155 235.86 1768.01 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
72. faua ENSDARG00000099022 232.67 1744.10 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
73. eif5a ENSDARG00000017235 229.48 1720.18 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
74. rplp0 ENSDARG00000051783 229.48 1720.18 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
75. pfn1 ENSDARG00000088091 223.11 1672.43 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
76. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 223.11 1672.43 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
77. rps5 ENSDARG00000043453 219.92 1648.52 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
78. cyt1l ENSDARG00000036832 216.73 1624.61 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
79. fkbp1aa ENSDARG00000022684 216.73 1624.61 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
80. hmgn2 ENSDARG00000099572 216.73 1624.61 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
81. rps6 ENSDARG00000019778 216.73 1624.61 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
82. rpl31 ENSDARG00000053365 207.17 1552.95 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
83. rpl38 ENSDARG00000006413 200.80 1505.20 ribosomal protein L38 [Source:ZFIN;Acc:ZDB-GENE-030131-8752]
84. hnrnpab hnrnpab 194.42 1457.37
85. rpl17 ENSDARG00000057556 194.42 1457.37 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
86. rpl24 ENSDARG00000099104 194.42 1457.37 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
87. rplp2 ENSDARG00000101406 194.42 1457.37 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
88. rps24 ENSDARG00000039347 194.42 1457.37 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
89. zgc:165571 zgc:165571 194.42 1457.37
90. RPL29 ENSDARG00000077717 188.05 1409.62 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
91. h3f3a 184.86 1385.71 H3 histone, family 3A, transcript variant X1
92. rps20 ENSDARG00000036044 184.86 1385.71 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
93. ran ENSDARG00000057026 181.67 1361.80 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
94. cirbp cirbp 178.49 1337.96
95. zgc:92061 zgc:92061 178.49 1337.96
96. zgc:92533 zgc:92533 178.49 1337.96
97. hnrnpa0a ENSDARG00000089302 172.11 1290.14 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
98. rps4x ENSDARG00000014690 172.11 1290.14 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. zgc:123194 zgc:123194 168.92 1266.23
100. cox8a ENSDARG00000095273 165.74 1242.39 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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