Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s38.

Sample reads: 133,389. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 7900.88 59234.46
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3435.96 25760.07 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. ckma ENSDARG00000035327, ENSDARG00000114671 2541.76 19056.08 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
4. tpma ENSDARG00000033683 2492.76 18688.71 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. mt-nd2 ENSDARG00000063899 1770.04 13270.34 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-co3 ENSDARG00000063912 1629.17 12214.21 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
7. ckmb ENSDARG00000040565 1500.55 11249.92 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. mt-co2 ENSDARG00000063908 1384.19 10377.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-atp6 ENSDARG00000063911 1353.56 10147.91 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actc1b ENSDARG00000099197 1347.44 10102.02 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. mt-nd4 ENSDARG00000063917 1249.44 9367.30 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
12. atp2a1 ENSDARG00000020574 1175.94 8816.25 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. actb2 ENSDARG00000037870 1139.20 8540.81 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. mylz3 ENSDARG00000017441 998.33 7484.68 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
15. si:dkey-151g10.6 si:dkey-151g10.6 979.95 7346.88
16. tmsb4x ENSDARG00000077777 796.21 5969.34 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
17. pvalb2 ENSDARG00000002768, ENSDARG00000114085 777.84 5831.62 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
18. eef1a1l1 ENSDARG00000020850 765.59 5739.78 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. tnnc2 ENSDARG00000070835, ENSDARG00000111155 643.09 4821.37 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
20. hmga1a ENSDARG00000028335 618.60 4637.77 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
21. zgc:112425 zgc:112425 606.35 4545.93
22. mt-nd1 ENSDARG00000063895 557.35 4178.56 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
23. ppiaa ENSDARG00000009212 545.10 4086.72 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
24. apoc1l apoc1l 532.85 3994.88
25. hspa8 ENSDARG00000068992, ENSDARG00000114726 520.60 3903.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
26. btf3 ENSDARG00000035400, ENSDARG00000116462 514.48 3857.16 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
27. rpl18a ENSDARG00000025073 508.35 3811.20 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
28. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 477.73 3581.64 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
29. mt-cyb ENSDARG00000063924 465.48 3489.80 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. eef2b ENSDARG00000100371, ENSDARG00000109247 459.35 3443.84 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 453.23 3397.95 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. ttna ttna 447.10 3352.00
33. zgc:161979_1 zgc:161979_1 447.10 3352.00
34. myhz1.3 ENSDARG00000067997 428.73 3214.27 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
35. si:ch211-226o13.2 416.48 3122.43 si:ch211-226o13.2
36. acta1a ENSDARG00000036371 404.23 3030.59 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
37. apoa1b ENSDARG00000101324 404.23 3030.59 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
38. fabp3 ENSDARG00000023290 379.73 2846.91 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
39. rps26l ENSDARG00000030408 367.48 2755.07 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
40. apobb apobb 361.36 2709.19
41. rpl26 ENSDARG00000102317 355.23 2663.23 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. rps6 ENSDARG00000019778 349.11 2617.35 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
43. actb1 ENSDARG00000037746, ENSDARG00000113649 342.98 2571.39 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
44. rpl19 ENSDARG00000013307 342.98 2571.39 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
45. ttnb ttnb 342.98 2571.39
46. eif5a ENSDARG00000017235 330.73 2479.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
47. zgc:66286 zgc:66286 330.73 2479.55
48. aldoab ENSDARG00000034470 324.61 2433.67 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
49. apoeb ENSDARG00000040295 318.49 2387.78 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
50. rpl23 ENSDARG00000053457 318.49 2387.78 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
51. apoa2 ENSDARG00000015866 312.36 2341.82 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
52. myl1 ENSDARG00000014196 312.36 2341.82 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
53. rps3 ENSDARG00000103007 312.36 2341.82 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
54. acta1b ENSDARG00000055618 306.24 2295.94 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
55. apoa1a ENSDARG00000012076, ENSDARG00000110395 293.99 2204.10 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
56. zgc:153129 zgc:153129 293.99 2204.10
57. bhmt ENSDARG00000013430 287.86 2158.14 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
58. myl10 ENSDARG00000062592 287.86 2158.14 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
59. atp5g3b 281.74 2112.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
60. rpl11 ENSDARG00000043509 275.61 2066.30 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. rpl36a ENSDARG00000058105, ENSDARG00000112656 275.61 2066.30 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
62. rps20 ENSDARG00000036044 275.61 2066.30 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
63. rps14 ENSDARG00000036629 269.49 2020.42 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
64. rpl8 ENSDARG00000014867 263.36 1974.46 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
65. rpl36 ENSDARG00000100588 257.24 1928.58 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
66. rps2 ENSDARG00000077291 257.24 1928.58 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 251.11 1882.62 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. rps19 ENSDARG00000030602 251.11 1882.62 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
69. ATP5B 238.86 1790.78 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
70. hsp90aa1.1 ENSDARG00000010478 238.86 1790.78 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
71. rpl15 ENSDARG00000009285 238.86 1790.78 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
72. rps15 ENSDARG00000070849, ENSDARG00000110979 238.86 1790.78 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. rps9 ENSDARG00000011405, ENSDARG00000113248 238.86 1790.78 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
74. mt-co1 ENSDARG00000063905 232.74 1744.90 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
75. ptmab ENSDARG00000101766 232.74 1744.90 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
76. rpl39 ENSDARG00000036316, ENSDARG00000117167 232.74 1744.90 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
77. rps10 ENSDARG00000034897 232.74 1744.90 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
78. rps23 ENSDARG00000021838 232.74 1744.90 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
79. rpsa ENSDARG00000019181 232.74 1744.90 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
80. si:ch1073-429i10.3 232.74 1744.90 si:ch1073-429i10.3, transcript variant X2
81. zgc:161979 zgc:161979 232.74 1744.90
82. krt8 ENSDARG00000058358, ENSDARG00000109279 226.61 1698.94 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
83. rps15a ENSDARG00000010160 226.61 1698.94 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
84. tnnt3a ENSDARG00000030270 226.61 1698.94 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
85. rpl17 ENSDARG00000057556 220.49 1653.06 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
86. rplp1 ENSDARG00000021864 220.49 1653.06 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
87. rplp0 ENSDARG00000051783 208.24 1561.22 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
88. rps12 ENSDARG00000036875, ENSDARG00000115157 208.24 1561.22 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
89. rps27.1 ENSDARG00000023298 208.24 1561.22 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
90. rps4x ENSDARG00000014690 208.24 1561.22 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
91. id1 ENSDARG00000040764 202.12 1515.33 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
92. pvalb1 ENSDARG00000037789 202.12 1515.33 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 202.12 1515.33 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rps27a ENSDARG00000032725, ENSDARG00000114059 202.12 1515.33 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
95. cox4i1 ENSDARG00000032970 195.99 1469.38 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
96. faua ENSDARG00000099022 195.99 1469.38 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
97. pabpc1a ENSDARG00000017219 195.99 1469.38 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
98. col2a1a ENSDARG00000069093, ENSDARG00000111202 189.87 1423.49 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
99. tnni2b.1 ENSDARG00000035958 189.87 1423.49 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
100. hmgn2 ENSDARG00000099572 183.74 1377.54 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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