Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s36.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 3621.81 27150.30
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3187.99 23898.24 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2872.47 21533.00 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckma ENSDARG00000035327, ENSDARG00000114671 2050.83 15373.71 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
5. ckmb ENSDARG00000040565 1965.38 14733.15 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co2 ENSDARG00000063908 1899.64 14240.34 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 1847.06 13846.18 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mt-co3 ENSDARG00000063912 1741.89 13057.79 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-nd2 ENSDARG00000063899 1689.30 12663.56 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
10. mt-atp6 ENSDARG00000063911 1432.95 10741.87 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. actc1b ENSDARG00000099197 1367.22 10249.14 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. mylz3 ENSDARG00000017441 1117.44 8376.70 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
13. actb2 ENSDARG00000037870 1064.85 7982.47 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. atp2a1 ENSDARG00000020574 1058.28 7933.22 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. si:dkey-151g10.6 si:dkey-151g10.6 999.12 7489.74
16. eef1a1l1 ENSDARG00000020850 788.78 5912.96 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. apoc1l apoc1l 749.34 5617.30
18. tnnc2 ENSDARG00000070835, ENSDARG00000111155 742.77 5568.05 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
19. apoa2 ENSDARG00000015866 657.32 4927.49 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
20. pvalb2 ENSDARG00000002768, ENSDARG00000114085 657.32 4927.49 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
21. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 650.74 4878.16 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
22. zgc:112425 zgc:112425 650.74 4878.16
23. mt-nd1 ENSDARG00000063895 644.17 4828.91 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
24. myhz1.3 ENSDARG00000067997 644.17 4828.91 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. apoa1b ENSDARG00000101324 604.73 4533.26 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
26. tmsb4x ENSDARG00000077777 571.87 4286.93 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
27. ppiaa ENSDARG00000009212 565.29 4237.60 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
28. apobb apobb 552.15 4139.10
29. zgc:161979_1 zgc:161979_1 545.57 4089.78
30. hspa8 ENSDARG00000068992, ENSDARG00000114726 532.43 3991.27 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
31. mt-cyb ENSDARG00000063924 525.85 3941.95 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
32. rpl23 ENSDARG00000053457 492.99 3695.62 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. eef2b ENSDARG00000100371, ENSDARG00000109247 486.41 3646.29 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
34. hmga1a ENSDARG00000028335 466.69 3498.46 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
35. apoeb ENSDARG00000040295 460.12 3449.21 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
36. si:ch211-226o13.2 440.40 3301.39 si:ch211-226o13.2
37. ttna ttna 407.54 3055.06
38. zgc:153129 zgc:153129 407.54 3055.06
39. btf3 ENSDARG00000035400, ENSDARG00000116462 400.96 3005.73 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. rps26l ENSDARG00000030408 394.39 2956.48 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
41. acta1b ENSDARG00000055618 381.24 2857.90 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
42. aldoab ENSDARG00000034470 374.67 2808.65 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
43. rpl8 ENSDARG00000014867 374.67 2808.65 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
44. zgc:161979 zgc:161979 374.67 2808.65
45. acta1a ENSDARG00000036371 368.10 2759.40 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
46. myl1 ENSDARG00000014196 368.10 2759.40 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
47. myl10 ENSDARG00000062592 368.10 2759.40 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
48. rpl26 ENSDARG00000102317 368.10 2759.40 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
49. actb1 ENSDARG00000037746, ENSDARG00000113649 361.52 2710.07 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
50. bhmt ENSDARG00000013430 361.52 2710.07 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
51. rpl10a ENSDARG00000042905, ENSDARG00000115649 354.95 2660.82 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
52. rpl19 ENSDARG00000013307 354.95 2660.82 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
53. rps6 ENSDARG00000019778 348.38 2611.57 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
54. apoa1a ENSDARG00000012076, ENSDARG00000110395 328.66 2463.75 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
55. zgc:66286 zgc:66286 328.66 2463.75
56. rpl39 ENSDARG00000036316, ENSDARG00000117167 322.09 2414.49 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
57. atp5g3b 315.51 2365.17 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
58. mt-co1 ENSDARG00000063905 308.94 2315.92 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
59. rpl18a ENSDARG00000025073 295.79 2217.34 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
60. fabp3 ENSDARG00000023290 289.22 2168.09 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
61. rps12 ENSDARG00000036875, ENSDARG00000115157 289.22 2168.09 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
62. tnni2a.4 ENSDARG00000029069 289.22 2168.09 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
63. eif5a ENSDARG00000017235 282.65 2118.84 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
64. rpl21 ENSDARG00000010516, ENSDARG00000110263 282.65 2118.84 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
65. ptmab ENSDARG00000101766 269.50 2020.26 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
66. rps27a ENSDARG00000032725, ENSDARG00000114059 262.93 1971.01 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
67. ATP5B 256.35 1921.69 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
68. rpl36a ENSDARG00000058105, ENSDARG00000112656 256.35 1921.69 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
69. rps10 ENSDARG00000034897 256.35 1921.69 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
70. krt8 ENSDARG00000058358, ENSDARG00000109279 249.78 1872.43 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
71. rps2 ENSDARG00000077291 249.78 1872.43 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. rps23 ENSDARG00000021838 249.78 1872.43 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
73. tnnt3b ENSDARG00000068457 249.78 1872.43 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
74. ttnb ttnb 249.78 1872.43
75. rpl9 ENSDARG00000037350, ENSDARG00000112384 243.21 1823.18 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
76. rplp0 ENSDARG00000051783 243.21 1823.18 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
77. rps14 ENSDARG00000036629 243.21 1823.18 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
78. rps5 ENSDARG00000043453 243.21 1823.18 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
79. tnnt3a ENSDARG00000030270 243.21 1823.18 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
80. rpl6 ENSDARG00000058451 236.63 1773.86 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
81. rpsa ENSDARG00000019181 230.06 1724.61 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. tnni2b.1 ENSDARG00000035958 230.06 1724.61 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
83. rps20 ENSDARG00000036044 223.49 1675.36 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
84. hsp90aa1.1 ENSDARG00000010478 210.34 1576.78 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
85. rps15a ENSDARG00000010160 210.34 1576.78 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
86. tnnt2c ENSDARG00000032242 210.34 1576.78 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
87. cfl1l ENSDARG00000012972 203.77 1527.53 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
88. ctsla ENSDARG00000007836 203.77 1527.53 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
89. rps3 ENSDARG00000103007 203.77 1527.53 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
90. rps9 ENSDARG00000011405, ENSDARG00000113248 203.77 1527.53 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
91. rps15 ENSDARG00000070849, ENSDARG00000110979 197.19 1478.20 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
92. col1a1b ENSDARG00000035809 190.62 1428.95 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
93. cox8a ENSDARG00000095273 190.62 1428.95 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
94. rpl17 ENSDARG00000057556 190.62 1428.95 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
95. rps27.1 ENSDARG00000023298 190.62 1428.95 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 190.62 1428.95 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
97. tpm3 ENSDARG00000005162 190.62 1428.95 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
98. desma ENSDARG00000058656 184.05 1379.70 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
99. pabpc1a ENSDARG00000017219 184.05 1379.70 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
100. krt18 ENSDARG00000018404, ENSDARG00000109528 177.48 1330.45 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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