Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s32.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16099.00 120681.35
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2922.95 21911.02 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 1830.47 13721.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1486.35 11141.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-nd4 ENSDARG00000063917 1424.16 10675.79 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1167.11 8748.89 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. actc1b ENSDARG00000099197 1162.96 8717.78 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. mt-co2 ENSDARG00000063908 1106.99 8298.22 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-co3 ENSDARG00000063912 1019.92 7645.53 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. ckmb ENSDARG00000040565 1017.85 7630.01 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
11. si:dkey-151g10.6 si:dkey-151g10.6 1007.48 7552.27
12. atp2a1 ENSDARG00000020574 1001.26 7505.65 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. mt-atp6 ENSDARG00000063911 945.29 7086.08 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. actb2 ENSDARG00000037870 839.57 6293.59 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. tmsb4x ENSDARG00000077777 777.38 5827.40 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
16. eef1a1l1 ENSDARG00000020850 731.77 5485.50 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mylz3 ENSDARG00000017441 729.70 5469.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
18. zgc:161979_1 zgc:161979_1 700.68 5252.44
19. mt-nd1 ENSDARG00000063895 644.71 4832.88 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. ppiaa ENSDARG00000009212 638.49 4786.25 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. tnnc2 ENSDARG00000070835, ENSDARG00000111155 590.81 4428.83 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
22. hspa8 ENSDARG00000068992, ENSDARG00000114726 588.74 4413.31 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
23. apoa1b ENSDARG00000101324 547.27 4102.45 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. apoeb ENSDARG00000040295 516.18 3869.39 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
25. zgc:112425 zgc:112425 516.18 3869.39
26. apoc1l apoc1l 495.45 3713.99
27. eef2b ENSDARG00000100371, ENSDARG00000109247 485.08 3636.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
28. mt-cyb ENSDARG00000063924 462.28 3465.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. rpl10a ENSDARG00000042905, ENSDARG00000115649 447.77 3356.57 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
30. hmga1a ENSDARG00000028335 435.33 3263.32 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. rps26l ENSDARG00000030408 427.04 3201.18 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
32. apobb apobb 424.97 3185.66
33. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 410.46 3076.89 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
34. pvalb2 ENSDARG00000002768, ENSDARG00000114085 408.38 3061.30 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
35. rpl18a ENSDARG00000025073 400.09 2999.16 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. acta1a ENSDARG00000036371 398.02 2983.64 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
37. myhz1.3 ENSDARG00000067997 398.02 2983.64 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
38. actb1 ENSDARG00000037746, ENSDARG00000113649 395.95 2968.12 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. btf3 ENSDARG00000035400, ENSDARG00000116462 395.95 2968.12 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. zgc:161979 zgc:161979 393.87 2952.53
41. rpl23 ENSDARG00000053457 391.80 2937.01 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. rpl8 ENSDARG00000014867 389.73 2921.49 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
43. zgc:66286 zgc:66286 385.58 2890.39
44. acta1b ENSDARG00000055618 377.29 2828.24 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
45. rpl26 ENSDARG00000102317 375.21 2812.65 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
46. apoa2 ENSDARG00000015866 371.07 2781.62 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
47. rpl36a ENSDARG00000058105, ENSDARG00000112656 354.48 2657.25 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
48. ttna ttna 354.48 2657.25
49. myl10 ENSDARG00000062592 346.19 2595.11 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
50. pabpc1a ENSDARG00000017219 323.39 2424.20 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 323.39 2424.20 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. rps14 ENSDARG00000036629 323.39 2424.20 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
53. rps23 ENSDARG00000021838 306.81 2299.91 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. ptmab ENSDARG00000101766 300.59 2253.28 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
55. fabp3 ENSDARG00000023290 298.51 2237.69 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. rpl19 ENSDARG00000013307 298.51 2237.69 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. rpsa ENSDARG00000019181 298.51 2237.69 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
58. aldoab ENSDARG00000034470 292.29 2191.06 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
59. tnnt3a ENSDARG00000030270 292.29 2191.06 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
60. rps9 ENSDARG00000011405, ENSDARG00000113248 290.22 2175.55 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
61. rps5 ENSDARG00000043453 277.78 2082.29 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
62. zgc:153129 zgc:153129 275.71 2066.78
63. myl1 ENSDARG00000014196 273.64 2051.26 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
64. hsp90aa1.1 ENSDARG00000010478 271.56 2035.67 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
65. rpl11 ENSDARG00000043509 271.56 2035.67 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. apoa1a ENSDARG00000012076, ENSDARG00000110395 269.49 2020.15 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
67. rplp1 ENSDARG00000021864 265.35 1989.12 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
68. ttnb ttnb 265.35 1989.12
69. eif5a ENSDARG00000017235 263.27 1973.53 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
70. rps15a ENSDARG00000010160 263.27 1973.53 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
71. rps4x ENSDARG00000014690 259.13 1942.49 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
72. rpl15 ENSDARG00000009285 257.05 1926.90 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
73. tpm3 ENSDARG00000005162 254.98 1911.38 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
74. rpl36 ENSDARG00000100588 252.91 1895.86 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
75. rpl27 ENSDARG00000015128 250.83 1880.27 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
76. rps10 ENSDARG00000034897 250.83 1880.27 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
77. rps3 ENSDARG00000103007 248.76 1864.76 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
78. tnnt2c ENSDARG00000032242 246.69 1849.24 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
79. rpl9 ENSDARG00000037350, ENSDARG00000112384 244.62 1833.72 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
80. si:dkey-150i13.2 ENSDARG00000071052 244.62 1833.72 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
81. id1 ENSDARG00000040764 240.47 1802.61 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
82. tnni2b.1 ENSDARG00000035958 240.47 1802.61 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
83. ATP5B 230.10 1724.88 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
84. rps27.1 ENSDARG00000023298 230.10 1724.88 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
85. rps20 ENSDARG00000036044 228.03 1709.36 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. rps29 ENSDARG00000041232 228.03 1709.36 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
87. rpl18 ENSDARG00000029533 223.89 1678.32 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
88. rps27a ENSDARG00000032725, ENSDARG00000114059 221.81 1662.73 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
89. krt8 ENSDARG00000058358, ENSDARG00000109279 219.74 1647.22 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
90. myhz2 ENSDARG00000012944 219.74 1647.22 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
91. rplp0 ENSDARG00000051783 213.52 1600.59 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
92. rps6 ENSDARG00000019778 213.52 1600.59 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
93. rps2 ENSDARG00000077291 209.37 1569.48 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
94. atp5g3b 205.23 1538.45 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
95. rpl7 ENSDARG00000007320 203.16 1522.93 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
96. si:dkeyp-86f7.3 si:dkeyp-86f7.3 203.16 1522.93
97. COX5B_1 ENSDARG00000015978 201.08 1507.34 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
98. ctsla ENSDARG00000007836 196.94 1476.30 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
99. mt-co1 ENSDARG00000063905 196.94 1476.30 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
100. rpl5b ENSDARG00000015862, ENSDARG00000109661 196.94 1476.30 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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