Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s3.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20867.12 156409.63
2. krt4 ENSDARG00000017624, ENSDARG00000115790 5918.82 44364.55 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1733.14 12990.76 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoc1l apoc1l 1671.82 12531.14
5. actb2 ENSDARG00000037870 1099.56 8241.76 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. si:dkey-151g10.6 si:dkey-151g10.6 948.32 7108.14
7. eef1a1l1 ENSDARG00000020850 927.88 6954.93 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. ppiaa ENSDARG00000009212 694.89 5208.55 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 686.71 5147.24 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. efemp2a ENSDARG00000094324 678.54 5086.00 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
11. id1 ENSDARG00000040764 654.01 4902.14 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
12. mt-co2 ENSDARG00000063908 641.75 4810.24 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
13. mt-nd2 ENSDARG00000063899 641.75 4810.24 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. hmga1a ENSDARG00000028335 625.40 4687.69 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
15. mt-co3 ENSDARG00000063912 592.70 4442.59 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. rpl10a ENSDARG00000042905, ENSDARG00000115649 576.35 4320.04 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
17. zgc:112425 zgc:112425 576.35 4320.04
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 543.65 4074.93 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. apoeb ENSDARG00000040295 535.47 4013.62 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
20. btf3 ENSDARG00000035400, ENSDARG00000116462 510.95 3829.83 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
21. mt-nd4 ENSDARG00000063917 498.69 3737.93 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 482.33 3615.31 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. rpl18a ENSDARG00000025073 470.07 3523.41 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. rpl21 ENSDARG00000010516, ENSDARG00000110263 457.81 3431.52 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
25. cfl1l ENSDARG00000012972 441.46 3308.97 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
26. col1a1a ENSDARG00000012405, ENSDARG00000116113 429.20 3217.07 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
27. bcam ENSDARG00000090190 416.93 3125.10 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
28. rpl23 ENSDARG00000053457 412.85 3094.52 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
29. ptmab ENSDARG00000101766 396.50 2971.97 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
30. rpl26 ENSDARG00000102317 388.32 2910.65 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
31. hsp90ab1 ENSDARG00000029150 384.23 2880.00 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
32. rpl8 ENSDARG00000014867 371.97 2788.10 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
33. pabpc1a ENSDARG00000017219 363.79 2726.79 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
34. si:dkey-150i13.2 ENSDARG00000071052 335.18 2512.34 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
35. mt-atp6 ENSDARG00000063911 327.01 2451.11 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
36. rpl11 ENSDARG00000043509 327.01 2451.11 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
37. rpl36a ENSDARG00000058105, ENSDARG00000112656 327.01 2451.11 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
38. rpl18 ENSDARG00000029533 322.92 2420.45 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
39. rps23 ENSDARG00000021838 322.92 2420.45 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
40. rpl9 ENSDARG00000037350, ENSDARG00000112384 318.83 2389.79 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
41. AL954137.2 ENSDARG00000114408 306.57 2297.90
42. hmgn2 ENSDARG00000099572 298.39 2236.58 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
43. rpl27 ENSDARG00000015128 290.22 2175.35 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
44. rps26l ENSDARG00000030408 286.13 2144.69 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
45. krt8 ENSDARG00000058358, ENSDARG00000109279 273.87 2052.79 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
46. rps14 ENSDARG00000036629 269.78 2022.14 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
47. rps27a ENSDARG00000032725, ENSDARG00000114059 269.78 2022.14 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. rps9 ENSDARG00000011405, ENSDARG00000113248 269.78 2022.14 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
49. si:ch1073-429i10.3 269.78 2022.14 si:ch1073-429i10.3, transcript variant X2
50. rps3 ENSDARG00000103007 253.43 1899.59 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
51. rps12 ENSDARG00000036875, ENSDARG00000115157 249.34 1868.93 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
52. rps2 ENSDARG00000077291 245.26 1838.35 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
53. rpl15 ENSDARG00000009285 241.17 1807.69 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
54. rps27.1 ENSDARG00000023298 241.17 1807.69 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
55. si:dkeyp-86f7.3 si:dkeyp-86f7.3 241.17 1807.69
56. khdrbs1a ENSDARG00000052856 237.08 1777.03 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
57. rpl19 ENSDARG00000013307 237.08 1777.03 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
58. rps10 ENSDARG00000034897 237.08 1777.03 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
59. rps4x ENSDARG00000014690 237.08 1777.03 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
60. mt-cyb ENSDARG00000063924 232.99 1746.38 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
61. rpl36 ENSDARG00000100588 232.99 1746.38 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. rps29 ENSDARG00000041232 232.99 1746.38 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
63. mt-nd1 ENSDARG00000063895 228.90 1715.72 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
64. rps5 ENSDARG00000043453 228.90 1715.72 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
65. rpsa ENSDARG00000019181 228.90 1715.72 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
66. eif5a ENSDARG00000017235 216.64 1623.83 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
67. pcna ENSDARG00000054155 216.64 1623.83 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
68. rpl17 ENSDARG00000057556 216.64 1623.83 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
69. zgc:92061 zgc:92061 216.64 1623.83
70. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 212.55 1593.17 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
71. rpl5b ENSDARG00000015862, ENSDARG00000109661 212.55 1593.17 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
72. zgc:153129 zgc:153129 212.55 1593.17
73. faua ENSDARG00000099022 208.47 1562.59 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
74. fkbp1aa ENSDARG00000022684 208.47 1562.59 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
75. rps15 ENSDARG00000070849, ENSDARG00000110979 208.47 1562.59 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
76. rps20 ENSDARG00000036044 204.38 1531.93 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. rps24 ENSDARG00000039347 204.38 1531.93 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
78. rps13 ENSDARG00000036298, ENSDARG00000112818 200.29 1501.27 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
79. rpl39 ENSDARG00000036316, ENSDARG00000117167 196.20 1470.62 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
80. rpl7 ENSDARG00000007320 196.20 1470.62 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
81. RPL29 ENSDARG00000077717 192.12 1440.04 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
82. hnrnpab hnrnpab 192.12 1440.04
83. rplp1 ENSDARG00000021864 192.12 1440.04 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
84. capns1b ENSDARG00000013804 188.03 1409.38 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
85. h3f3a 188.03 1409.38 H3 histone, family 3A, transcript variant X1
86. rplp0 ENSDARG00000051783 188.03 1409.38 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. rps19 ENSDARG00000030602 183.94 1378.72 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
88. rps6 ENSDARG00000019778 183.94 1378.72 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
89. hnrnpa0a ENSDARG00000089302 179.85 1348.07 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
90. rpl14 ENSDARG00000103433 179.85 1348.07 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
91. rpl35a ENSDARG00000088030 179.85 1348.07 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
92. cirbp cirbp 175.77 1317.49
93. calua ENSDARG00000045676 171.68 1286.83 calumenin a [Source:ZFIN;Acc:ZDB-GENE-040625-166]
94. AC024175.17 AC024175.17 167.59 1256.17
95. cyt1l ENSDARG00000036832 167.59 1256.17 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
96. krt18 ENSDARG00000018404, ENSDARG00000109528 167.59 1256.17 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
97. RPL37A RPL37A 163.50 1225.52
98. frem2a ENSDARG00000076856 163.50 1225.52 Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
99. rpl22 ENSDARG00000070437 163.50 1225.52 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
100. pnrc2 ENSDARG00000053291, ENSDARG00000112537 159.42 1194.93 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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