Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s28.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18381.03 137777.43
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3366.67 25235.32 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 1803.63 13519.35 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1447.00 10846.18 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-nd4 ENSDARG00000063917 1312.20 9835.77 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. ckma ENSDARG00000035327, ENSDARG00000114671 1307.08 9797.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
7. ckmb ENSDARG00000040565 1110.85 8326.52 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. atp2a1 ENSDARG00000020574 1102.32 8262.58 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
9. actc1b ENSDARG00000099197 1051.12 7878.81 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. mt-co3 ENSDARG00000063912 911.20 6830.02 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. mt-co2 ENSDARG00000063908 873.66 6548.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. mt-atp6 ENSDARG00000063911 866.84 6497.51 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. si:dkey-151g10.6 si:dkey-151g10.6 848.07 6356.82
14. actb2 ENSDARG00000037870 805.41 6037.06 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. eef1a1l1 ENSDARG00000020850 697.91 5231.28 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mt-nd1 ENSDARG00000063895 697.91 5231.28 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
17. eef2b ENSDARG00000100371, ENSDARG00000109247 645.01 4834.76 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
18. ppiaa ENSDARG00000009212 645.01 4834.76 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. apoc1l apoc1l 622.83 4668.50
20. zgc:161979_1 zgc:161979_1 605.76 4540.55
21. tmsb4x ENSDARG00000077777 556.28 4169.67 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
22. tnnc2 ENSDARG00000070835, ENSDARG00000111155 554.57 4156.85 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
23. mylz3 ENSDARG00000017441 542.63 4067.35 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
24. apobb apobb 532.39 3990.60
25. apoa1b ENSDARG00000101324 518.74 3888.28 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 505.09 3785.97 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. apoeb ENSDARG00000040295 481.20 3606.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
28. mt-cyb ENSDARG00000063924 479.49 3594.08 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. zgc:112425 zgc:112425 464.13 3478.95
30. zgc:66286 zgc:66286 460.72 3453.39
31. btf3 ENSDARG00000035400, ENSDARG00000116462 457.31 3427.83 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
32. rpl10a ENSDARG00000042905, ENSDARG00000115649 455.60 3415.01 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
33. hspa8 ENSDARG00000068992, ENSDARG00000114726 431.71 3235.94 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
34. apoa2 ENSDARG00000015866 426.59 3197.56 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
35. rpl8 ENSDARG00000014867 414.65 3108.06 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. acta1a ENSDARG00000036371 411.24 3082.50 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
37. hmga1a ENSDARG00000028335 411.24 3082.50 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
38. rpl18a ENSDARG00000025073 406.12 3044.13 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
39. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 397.58 2980.11 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
40. myhz1.3 ENSDARG00000067997 392.47 2941.81 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
41. rpl23 ENSDARG00000053457 382.23 2865.06 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. fabp3 ENSDARG00000023290 380.52 2852.24 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
43. zgc:161979 zgc:161979 377.11 2826.68
44. rpl21 ENSDARG00000010516, ENSDARG00000110263 373.70 2801.12 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
45. myl10 ENSDARG00000062592 361.75 2711.54 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
46. acta1b ENSDARG00000055618 356.63 2673.17 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
47. ttna ttna 342.98 2570.85
48. apoa1a ENSDARG00000012076, ENSDARG00000110395 329.33 2468.54 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
49. rpl26 ENSDARG00000102317 327.62 2455.72 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
50. zgc:153129 zgc:153129 312.27 2340.66
51. rps26l ENSDARG00000030408 305.44 2289.47 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
52. aldoab ENSDARG00000034470 303.73 2276.65 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
53. eif5a ENSDARG00000017235 303.73 2276.65 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. rpl19 ENSDARG00000013307 303.73 2276.65 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 300.32 2251.09 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. rps3 ENSDARG00000103007 300.32 2251.09 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
57. rpl11 ENSDARG00000043509 298.61 2238.27 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 298.61 2238.27 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. rps23 ENSDARG00000021838 283.26 2123.21 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
60. pabpc1a ENSDARG00000017219 262.78 1969.70 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
61. ttnb ttnb 254.25 1905.76
62. rps6 ENSDARG00000019778 249.13 1867.39 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
63. rpsa ENSDARG00000019181 249.13 1867.39 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
64. ptmab ENSDARG00000101766 247.42 1854.57 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
65. rpl15 ENSDARG00000009285 244.01 1829.01 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
66. hsp90aa1.1 ENSDARG00000010478 242.30 1816.19 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
67. rps14 ENSDARG00000036629 242.30 1816.19 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
68. tnni2b.1 ENSDARG00000035958 233.77 1752.25 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
69. rps2 ENSDARG00000077291 230.36 1726.69 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
70. tpm3 ENSDARG00000005162 230.36 1726.69 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
71. rplp1 ENSDARG00000021864 228.65 1713.88 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
72. tnnt3a ENSDARG00000030270 228.65 1713.88 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
73. myl1 ENSDARG00000014196 221.83 1662.76 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
74. rpl5b ENSDARG00000015862, ENSDARG00000109661 221.83 1662.76 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
75. rps15a ENSDARG00000010160 220.12 1649.94 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
76. rpl7 ENSDARG00000007320 218.42 1637.20 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
77. rps9 ENSDARG00000011405, ENSDARG00000113248 216.71 1624.38 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
78. mt-co1 ENSDARG00000063905 213.30 1598.82 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
79. rps27.1 ENSDARG00000023298 211.59 1586.00 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. cfl1l ENSDARG00000012972 209.88 1573.18 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
81. id1 ENSDARG00000040764 209.88 1573.18 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
82. pvalb2 ENSDARG00000002768, ENSDARG00000114085 209.88 1573.18 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
83. rpl27 ENSDARG00000015128 209.88 1573.18 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
84. rps29 ENSDARG00000041232 209.88 1573.18 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
85. rps4x ENSDARG00000014690 209.88 1573.18 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. rplp0 ENSDARG00000051783 206.47 1547.62 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
87. atp5g3b 204.76 1534.81 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
88. si:dkey-150i13.2 ENSDARG00000071052 204.76 1534.81 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
89. RPL29 ENSDARG00000077717 203.06 1522.06 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. si:dkeyp-86f7.3 si:dkeyp-86f7.3 203.06 1522.06
91. rps20 ENSDARG00000036044 199.65 1496.50 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
92. faua ENSDARG00000099022 194.53 1458.13 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
93. rps27a ENSDARG00000032725, ENSDARG00000114059 194.53 1458.13 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
94. tnnt2c ENSDARG00000032242 192.82 1445.31 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
95. rps10 ENSDARG00000034897 191.11 1432.49 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
96. ATP5B 189.41 1419.75 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
97. rps12 ENSDARG00000036875, ENSDARG00000115157 189.41 1419.75 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
98. krt8 ENSDARG00000058358, ENSDARG00000109279 187.70 1406.93 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. COX5B_1 ENSDARG00000015978 185.99 1394.11 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
100. bhmt ENSDARG00000013430 185.99 1394.11 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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