Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Zebrafish_28hpf_whole3_PA, section s20.

Sample reads: 133,407. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15390.19 115362.81
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3395.81 25454.54 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1430.70 10724.34 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-nd4 ENSDARG00000063917 1157.50 8676.47 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. mt-co2 ENSDARG00000063908 1096.39 8218.39 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. si:dkey-151g10.6 si:dkey-151g10.6 1095.19 8209.40
7. tpma ENSDARG00000033683 1089.20 8164.50 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. mt-atp6 ENSDARG00000063911 1037.68 7778.31 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-co3 ENSDARG00000063912 880.71 6601.68 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. actb2 ENSDARG00000037870 871.12 6529.80 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. actc1b ENSDARG00000099197 811.21 6080.72 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. tmsb4x ENSDARG00000077777 794.43 5954.94 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. eef1a1l1 ENSDARG00000020850 753.69 5649.56 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. ckmb ENSDARG00000040565 746.50 5595.66 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
15. ckma ENSDARG00000035327, ENSDARG00000114671 666.22 4993.90 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
16. zgc:161979_1 zgc:161979_1 651.84 4886.11
17. ppiaa ENSDARG00000009212 639.86 4796.31 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
18. apoeb ENSDARG00000040295 632.67 4742.41 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
19. apoc1l apoc1l 627.88 4706.50
20. atp2a1 ENSDARG00000020574 588.34 4410.12 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
21. hbbe3 ENSDARG00000038147, ENSDARG00000109344 582.34 4365.14 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
22. mt-nd1 ENSDARG00000063895 581.15 4356.22 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
23. eef2b ENSDARG00000100371, ENSDARG00000109247 564.37 4230.44 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. actb1 ENSDARG00000037746, ENSDARG00000113649 558.38 4185.54 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 504.46 3781.36 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. hspa8 ENSDARG00000068992, ENSDARG00000114726 502.06 3763.37 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
27. apoa1b ENSDARG00000101324 487.68 3655.58 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
28. zgc:161979 zgc:161979 474.50 3556.79
29. apoa2 ENSDARG00000015866 464.92 3484.98 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
30. rpl23 ENSDARG00000053457 462.52 3466.99 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. rpl18a ENSDARG00000025073 445.75 3341.28 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
32. zgc:112425 zgc:112425 432.56 3242.41
33. mt-cyb ENSDARG00000063924 431.37 3233.49 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. zgc:66286 zgc:66286 422.98 3170.60
35. apobb apobb 416.99 3125.70
36. myl10 ENSDARG00000062592 408.60 3062.81 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
37. hmga1a ENSDARG00000028335 396.62 2973.01 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
38. rpl8 ENSDARG00000014867 394.22 2955.02 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
39. rps23 ENSDARG00000021838 382.24 2865.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
40. btf3 ENSDARG00000035400, ENSDARG00000116462 379.84 2847.23 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. tnnc2 ENSDARG00000070835, ENSDARG00000111155 372.65 2793.33 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
42. acta1a ENSDARG00000036371 370.26 2775.42 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
43. fabp3 ENSDARG00000023290 366.66 2748.43 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
44. rpl26 ENSDARG00000102317 360.67 2703.53 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
45. mylz3 ENSDARG00000017441 358.27 2685.54 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
46. hsp90aa1.1 ENSDARG00000010478 352.28 2640.64 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
47. rps26l ENSDARG00000030408 348.69 2613.73 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. rps14 ENSDARG00000036629 337.90 2532.85 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
49. zgc:153129 zgc:153129 336.71 2523.93
50. eif5a ENSDARG00000017235 330.71 2478.96 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
51. rpl36a ENSDARG00000058105, ENSDARG00000112656 309.15 2317.35 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
52. rpl21 ENSDARG00000010516, ENSDARG00000110263 307.95 2308.35 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
53. rplp1 ENSDARG00000021864 303.15 2272.37 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
54. acta1b ENSDARG00000055618 295.97 2218.55 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
55. rpl11 ENSDARG00000043509 289.97 2173.58 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
56. pabpc1a ENSDARG00000017219 288.78 2164.66 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
57. rpl9 ENSDARG00000037350, ENSDARG00000112384 288.78 2164.66 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
58. rpl19 ENSDARG00000013307 276.79 2074.78 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
59. cfl1l ENSDARG00000012972 275.60 2065.86 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
60. rps20 ENSDARG00000036044 274.40 2056.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
61. rps3 ENSDARG00000103007 274.40 2056.87 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
62. apoa1a ENSDARG00000012076, ENSDARG00000110395 268.41 2011.97 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
63. hbae3 ENSDARG00000079305 266.01 1993.98 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
64. rpl27 ENSDARG00000015128 266.01 1993.98 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
65. si:dkey-150i13.2 ENSDARG00000071052 266.01 1993.98 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
66. rps9 ENSDARG00000011405, ENSDARG00000113248 264.81 1984.98 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 257.62 1931.09 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. rpl15 ENSDARG00000009285 256.42 1922.09 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
69. id1 ENSDARG00000040764 255.22 1913.10 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
70. rpl5b ENSDARG00000015862, ENSDARG00000109661 255.22 1913.10 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
71. rpl36 ENSDARG00000100588 251.63 1886.18 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
72. ptmab ENSDARG00000101766 249.23 1868.19 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
73. tnni2b.1 ENSDARG00000035958 249.23 1868.19 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
74. ttna ttna 245.64 1841.28
75. rps2 ENSDARG00000077291 244.44 1832.29 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. myhz2 ENSDARG00000012944 243.24 1823.29 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
77. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 243.24 1823.29 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
78. rps27.1 ENSDARG00000023298 240.85 1805.38 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
79. rps6 ENSDARG00000019778 238.45 1787.39 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
80. rplp0 ENSDARG00000051783 237.25 1778.39 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
81. rps12 ENSDARG00000036875, ENSDARG00000115157 236.05 1769.40 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
82. rps29 ENSDARG00000041232 230.06 1724.50 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
83. fabp2 ENSDARG00000006427, ENSDARG00000110230 226.47 1697.59 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
84. rpl18 ENSDARG00000029533 225.27 1688.59 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. rps15 ENSDARG00000070849, ENSDARG00000110979 225.27 1688.59 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
86. rps10 ENSDARG00000034897 221.67 1661.61 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
87. tnnt2c ENSDARG00000032242 213.29 1598.79 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
88. tpm3 ENSDARG00000005162 210.89 1580.80 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
89. ATP5B 208.49 1562.81 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
90. si:dkeyp-86f7.3 si:dkeyp-86f7.3 208.49 1562.81
91. rpsa ENSDARG00000019181 206.10 1544.90 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
92. AC024175.17 AC024175.17 202.50 1517.91
93. aldoab ENSDARG00000034470 201.30 1508.92 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
94. si:ch1073-429i10.3 201.30 1508.92 si:ch1073-429i10.3, transcript variant X2
95. rps4x ENSDARG00000014690 200.11 1500.00 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
96. RPL29 ENSDARG00000077717 198.91 1491.00 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
97. myhz1.3 ENSDARG00000067997 198.91 1491.00 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
98. cirbp cirbp 197.71 1482.01
99. krt8 ENSDARG00000058358, ENSDARG00000109279 197.71 1482.01 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
100. faua ENSDARG00000099022 196.51 1473.01 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA