Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s19.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18900.23 141688.15
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3446.07 25833.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hbbe3 ENSDARG00000038147, ENSDARG00000109344 2056.07 15413.61 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
4. mt-co2 ENSDARG00000063908 1441.60 10807.15 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd2 ENSDARG00000063899 1271.17 9529.50 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. si:dkey-151g10.6 si:dkey-151g10.6 1142.96 8568.36
7. mt-co3 ENSDARG00000063912 1116.38 8369.09 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. mt-nd4 ENSDARG00000063917 1085.11 8134.67 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. tmsb4x ENSDARG00000077777 1063.22 7970.57 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. mt-atp6 ENSDARG00000063911 1030.38 7724.38 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. tpma ENSDARG00000033683 1011.62 7583.75 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
12. hbae3 ENSDARG00000079305 991.29 7431.34 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
13. AL935210.1 ENSDARG00000088330 756.76 5673.15 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
14. actb2 ENSDARG00000037870 717.67 5380.11 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. actc1b ENSDARG00000099197 716.11 5368.42 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. eef1a1l1 ENSDARG00000020850 695.78 5216.01 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mt-nd1 ENSDARG00000063895 644.18 4829.18 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. ppiaa ENSDARG00000009212 644.18 4829.18 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. ckmb ENSDARG00000040565 625.42 4688.55 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 600.40 4500.98 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. hspa8 ENSDARG00000068992, ENSDARG00000114726 544.12 4079.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
22. rpl18a ENSDARG00000025073 542.55 4067.30 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
23. ckma ENSDARG00000035327, ENSDARG00000114671 539.43 4043.91 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. rpl23 ENSDARG00000053457 475.32 3563.30 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
25. eef2b ENSDARG00000100371, ENSDARG00000109247 473.76 3551.61 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
26. hbae1_1 465.94 3492.98 hemoglobin, alpha embryonic 1
27. zgc:112425 zgc:112425 462.81 3469.52
28. actb1 ENSDARG00000037746, ENSDARG00000113649 453.43 3399.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
29. hmga1a ENSDARG00000028335 447.18 3352.35 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
30. rpl8 ENSDARG00000014867 440.92 3305.42 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 429.98 3223.40 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. atp2a1 ENSDARG00000020574 403.40 3024.14 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
33. rps29 ENSDARG00000041232 397.14 2977.21 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
34. rps23 ENSDARG00000021838 394.02 2953.82 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
35. btf3 ENSDARG00000035400, ENSDARG00000116462 389.32 2918.59 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 389.32 2918.59 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. tnnc2 ENSDARG00000070835, ENSDARG00000111155 389.32 2918.59 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
38. hbbe1.1 ENSDARG00000113599 386.20 2895.20 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
39. zgc:66286 zgc:66286 386.20 2895.20
40. acta1a ENSDARG00000036371 384.63 2883.43 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
41. rpl26 ENSDARG00000102317 384.63 2883.43 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
42. rps20 ENSDARG00000036044 384.63 2883.43 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
43. mt-cyb ENSDARG00000063924 376.82 2824.88 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
44. rpl19 ENSDARG00000013307 369.00 2766.26 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
45. hsp90aa1.1 ENSDARG00000010478 362.74 2719.33 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
46. mylz3 ENSDARG00000017441 353.36 2649.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
47. rps27a ENSDARG00000032725, ENSDARG00000114059 343.98 2578.69 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. rpl27 ENSDARG00000015128 336.16 2520.07 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
49. rpl36a ENSDARG00000058105, ENSDARG00000112656 336.16 2520.07 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
50. rplp1 ENSDARG00000021864 336.16 2520.07 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
51. rps26l ENSDARG00000030408 308.02 2309.11 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
52. rpl18 ENSDARG00000029533 298.64 2238.80 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
53. rpl36 ENSDARG00000100588 297.08 2227.10 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
54. eif5a ENSDARG00000017235 289.26 2168.48 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. rps14 ENSDARG00000036629 281.44 2109.85 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
56. rps15a ENSDARG00000010160 279.88 2098.16 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
57. rpl11 ENSDARG00000043509 272.06 2039.53 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. id1 ENSDARG00000040764 268.93 2016.07 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
59. myl10 ENSDARG00000062592 268.93 2016.07 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
60. rpl6 ENSDARG00000058451 264.24 1980.91 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
61. si:dkey-150i13.2 ENSDARG00000071052 259.55 1945.75 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
62. rps2 ENSDARG00000077291 251.73 1887.13 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
63. rpl15 ENSDARG00000009285 248.61 1863.74 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
64. rps4x ENSDARG00000014690 248.61 1863.74 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
65. faua ENSDARG00000099022 247.04 1851.97 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
66. rplp0 ENSDARG00000051783 247.04 1851.97 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
67. rps3 ENSDARG00000103007 245.48 1840.27 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
68. rps15 ENSDARG00000070849, ENSDARG00000110979 240.79 1805.12 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
69. fabp3 ENSDARG00000023290 239.22 1793.35 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
70. rpl35a ENSDARG00000088030 237.66 1781.65 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
71. rps9 ENSDARG00000011405, ENSDARG00000113248 236.10 1769.96 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
72. krt8 ENSDARG00000058358, ENSDARG00000109279 234.53 1758.19 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
73. rps10 ENSDARG00000034897 234.53 1758.19 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
74. atp5g3b 232.97 1746.49 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
75. mt-co1 ENSDARG00000063905 229.84 1723.03 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
76. rps6 ENSDARG00000019778 229.84 1723.03 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
77. rpl7 ENSDARG00000007320 228.28 1711.33 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
78. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 226.72 1699.64 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
79. rps5 ENSDARG00000043453 225.15 1687.87 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
80. rpl5b ENSDARG00000015862, ENSDARG00000109661 222.02 1664.40 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
81. rps12 ENSDARG00000036875, ENSDARG00000115157 220.46 1652.71 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
82. myhz2 ENSDARG00000012944 218.90 1641.01 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
83. rpl39 ENSDARG00000036316, ENSDARG00000117167 217.33 1629.24 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
84. rpl17 ENSDARG00000057556 211.08 1582.39 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
85. fth1a ENSDARG00000015551 207.95 1558.93 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
86. rps19 ENSDARG00000030602 206.39 1547.23 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
87. rps18 ENSDARG00000100392 204.83 1535.54 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
88. cfl1l ENSDARG00000012972 201.70 1512.07 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
89. myhz1.3 ENSDARG00000067997 200.13 1500.30 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
90. ptmab ENSDARG00000101766 195.44 1465.14 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
91. ttna ttna 195.44 1465.14
92. RPL29 ENSDARG00000077717 193.88 1453.45 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. rpsa ENSDARG00000019181 193.88 1453.45 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
94. si:dkeyp-86f7.3 si:dkeyp-86f7.3 193.88 1453.45
95. AL954137.2 ENSDARG00000114408 192.32 1441.75
96. apoa2 ENSDARG00000015866 192.32 1441.75 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
97. rps24 ENSDARG00000039347 192.32 1441.75 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
98. tpm3 ENSDARG00000005162 190.75 1429.98 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
99. rpl23a ENSDARG00000006316 186.06 1394.82 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
100. acta1b ENSDARG00000055618 182.94 1371.43 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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