Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s18.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15793.20 118389.51
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3330.58 24966.80 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1476.33 11066.91 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. hbbe3 ENSDARG00000038147, ENSDARG00000109344 1423.29 10669.31 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
5. mt-nd4 ENSDARG00000063917 1186.81 8896.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. tpma ENSDARG00000033683 1080.73 8101.40 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
7. si:dkey-151g10.6 si:dkey-151g10.6 976.85 7322.70
8. mt-co3 ENSDARG00000063912 923.81 6925.10 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-co2 ENSDARG00000063908 903.92 6776.00 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. actb2 ENSDARG00000037870 879.61 6593.76 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. mt-atp6 ENSDARG00000063911 815.52 6113.33 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. tmsb4x ENSDARG00000077777 813.31 6096.76 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. eef1a1l1 ENSDARG00000020850 789.00 5914.53 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. actc1b ENSDARG00000099197 762.48 5715.73 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 700.59 5251.79 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. ppiaa ENSDARG00000009212 696.17 5218.65 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. hbae3 ENSDARG00000079305 654.18 4903.89 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
18. mt-nd1 ENSDARG00000063895 638.71 4787.92 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. zgc:112425 zgc:112425 601.14 4506.29
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 567.99 4257.79 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. ckma ENSDARG00000035327, ENSDARG00000114671 554.73 4158.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 545.89 4092.12 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. actb1 ENSDARG00000037746, ENSDARG00000113649 541.47 4058.99 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
24. ckmb ENSDARG00000040565 523.79 3926.45 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. rpl8 ENSDARG00000014867 519.37 3893.32 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
26. zgc:66286 zgc:66286 517.16 3876.75
27. btf3 ENSDARG00000035400, ENSDARG00000116462 503.90 3777.35 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
28. rpl26 ENSDARG00000102317 497.27 3727.65 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
29. rpl18a ENSDARG00000025073 479.59 3595.12 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. AL935210.1 ENSDARG00000088330 468.54 3512.29 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
31. hmga1a ENSDARG00000028335 464.12 3479.15 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. myl10 ENSDARG00000062592 459.70 3446.02 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
33. acta1a ENSDARG00000036371 455.28 3412.89 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
34. atp2a1 ENSDARG00000020574 455.28 3412.89 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
35. fabp3 ENSDARG00000023290 437.60 3280.35 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
36. rps23 ENSDARG00000021838 433.17 3247.14 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
37. rpl21 ENSDARG00000010516, ENSDARG00000110263 426.54 3197.44 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
38. rpl23 ENSDARG00000053457 419.91 3147.74 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
39. rpl36a ENSDARG00000058105, ENSDARG00000112656 406.65 3048.34 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
40. tnnc2 ENSDARG00000070835, ENSDARG00000111155 406.65 3048.34 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
41. mt-cyb ENSDARG00000063924 402.23 3015.21 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
42. rps26l ENSDARG00000030408 391.18 2932.38 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
43. hsp90aa1.1 ENSDARG00000010478 380.13 2849.54 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
44. rpl11 ENSDARG00000043509 360.24 2700.44 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. rpl5b ENSDARG00000015862, ENSDARG00000109661 360.24 2700.44 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
46. rpl9 ENSDARG00000037350, ENSDARG00000112384 344.77 2584.48 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
47. eif5a ENSDARG00000017235 335.93 2518.21 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
48. rps14 ENSDARG00000036629 333.72 2501.64 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
49. id1 ENSDARG00000040764 331.51 2485.08 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
50. rpl36 ENSDARG00000100588 329.30 2468.51 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
51. rps12 ENSDARG00000036875, ENSDARG00000115157 316.04 2369.11 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
52. rplp1 ENSDARG00000021864 313.83 2352.54 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. rpl15 ENSDARG00000009285 309.41 2319.41 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
54. rps29 ENSDARG00000041232 304.99 2286.28 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
55. rps27a ENSDARG00000032725, ENSDARG00000114059 302.78 2269.71 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
56. ptmab ENSDARG00000101766 298.36 2236.58 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. rps6 ENSDARG00000019778 296.15 2220.01 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
58. rpl27 ENSDARG00000015128 291.73 2186.88 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
59. pabpc1a ENSDARG00000017219 287.31 2153.74 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
60. mylz3 ENSDARG00000017441 285.10 2137.18 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
61. rps2 ENSDARG00000077291 285.10 2137.18 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
62. rpsa ENSDARG00000019181 285.10 2137.18 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
63. rps4x ENSDARG00000014690 280.68 2104.04 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
64. rpl19 ENSDARG00000013307 274.05 2054.34 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
65. rps15 ENSDARG00000070849, ENSDARG00000110979 274.05 2054.34 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
66. rpl7 ENSDARG00000007320 265.21 1988.08 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
67. rps9 ENSDARG00000011405, ENSDARG00000113248 263.00 1971.51 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
68. rplp0 ENSDARG00000051783 258.58 1938.38 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
69. rps15a ENSDARG00000010160 251.95 1888.68 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
70. tnnt2c ENSDARG00000032242 251.95 1888.68 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
71. rps10 ENSDARG00000034897 249.74 1872.11 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
72. smyhc1 ENSDARG00000099959, ENSDARG00000115916 243.11 1822.41 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
73. tnni2b.1 ENSDARG00000035958 243.11 1822.41 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
74. cfl1l ENSDARG00000012972 240.90 1805.84 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
75. rps20 ENSDARG00000036044 240.90 1805.84 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
76. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 234.27 1756.14 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
77. rpl18 ENSDARG00000029533 234.27 1756.14 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. RPL29 ENSDARG00000077717 232.06 1739.58 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. hbae1_1 229.85 1723.01 hemoglobin, alpha embryonic 1
80. mt-co1 ENSDARG00000063905 229.85 1723.01 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
81. si:dkeyp-86f7.3 si:dkeyp-86f7.3 229.85 1723.01
82. acta1b ENSDARG00000055618 223.22 1673.31 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
83. cirbp cirbp 221.01 1656.74
84. ttna ttna 221.01 1656.74
85. tpm3 ENSDARG00000005162 218.80 1640.18 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
86. hbbe1.1 ENSDARG00000113599 216.59 1623.61 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
87. efemp2a ENSDARG00000094324 214.38 1607.04 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
88. rpl6 ENSDARG00000058451 209.96 1573.91 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
89. rpl22 ENSDARG00000070437 207.75 1557.34 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
90. rps24 ENSDARG00000039347 207.75 1557.34 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
91. hsp90ab1 ENSDARG00000029150 203.33 1524.21 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
92. rps27.1 ENSDARG00000023298 203.33 1524.21 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
93. rps3 ENSDARG00000103007 203.33 1524.21 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
94. atp5g3b 201.12 1507.64 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
95. rps18 ENSDARG00000100392 194.49 1457.94 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
96. si:dkey-150i13.2 ENSDARG00000071052 194.49 1457.94 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
97. krt8 ENSDARG00000058358, ENSDARG00000109279 192.28 1441.38 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
98. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 187.86 1408.24 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
99. rps5 ENSDARG00000043453 187.86 1408.24 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
100. fth1a ENSDARG00000015551 185.65 1391.68 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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