Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s17.

Sample reads: 133,420. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19731.15 147887.74
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3256.56 24408.37 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1411.68 10580.74 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. si:dkey-151g10.6 si:dkey-151g10.6 1183.22 8868.40
5. mt-co2 ENSDARG00000063908 1159.51 8690.69 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-co3 ENSDARG00000063912 1012.96 7592.28 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
7. tpma ENSDARG00000033683 989.25 7414.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. eef1a1l1 ENSDARG00000020850 915.97 6865.32 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. hbbe3 ENSDARG00000038147, ENSDARG00000109344 911.66 6833.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
10. mt-atp6 ENSDARG00000063911 851.32 6380.76 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. actb2 ENSDARG00000037870 814.68 6106.14 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. ppiaa ENSDARG00000009212 808.21 6057.65 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
13. actc1b ENSDARG00000099197 741.40 5556.90 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. tmsb4x ENSDARG00000077777 711.23 5330.77 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
15. eef2b ENSDARG00000100371, ENSDARG00000109247 704.76 5282.28 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
16. hspa8 ENSDARG00000068992, ENSDARG00000114726 696.14 5217.67 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
17. mt-nd4 ENSDARG00000063917 661.66 4959.23 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
18. mt-nd1 ENSDARG00000063895 597.00 4474.60 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 566.83 4248.47 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. ckma ENSDARG00000035327, ENSDARG00000114671 556.05 4167.67 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
21. rpl23 ENSDARG00000053457 534.50 4006.15 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. zgc:66286 zgc:66286 530.19 3973.85
23. hmga1a ENSDARG00000028335 517.26 3876.94 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
24. ckmb ENSDARG00000040565 512.95 3844.63 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. btf3 ENSDARG00000035400, ENSDARG00000116462 497.86 3731.53 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
26. actb1 ENSDARG00000037746, ENSDARG00000113649 465.53 3489.21 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
27. acta1a ENSDARG00000036371 459.06 3440.72 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. myl10 ENSDARG00000062592 448.29 3360.00 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
29. rpl8 ENSDARG00000014867 437.51 3279.20 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. tnnc2 ENSDARG00000070835, ENSDARG00000111155 433.20 3246.89 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
31. hsp90aa1.1 ENSDARG00000010478 428.89 3214.59 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
32. rpl26 ENSDARG00000102317 422.43 3166.17 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
33. hbae3 ENSDARG00000079305 396.56 2972.27 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
34. rps26l ENSDARG00000030408 390.10 2923.85 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
35. rpl18a ENSDARG00000025073 387.94 2907.66 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. id1 ENSDARG00000040764 385.79 2891.55 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
37. rpl9 ENSDARG00000037350, ENSDARG00000112384 375.01 2810.75 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
38. rps23 ENSDARG00000021838 368.54 2762.26 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
39. mylz3 ENSDARG00000017441 366.39 2746.14 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
40. rpl21 ENSDARG00000010516, ENSDARG00000110263 359.92 2697.65 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
41. atp2a1 ENSDARG00000020574 357.77 2681.54 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
42. mt-cyb ENSDARG00000063924 355.61 2665.35 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
43. rpl19 ENSDARG00000013307 351.30 2633.04 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 351.30 2633.04 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. rps2 ENSDARG00000077291 351.30 2633.04 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
46. rpl5b ENSDARG00000015862, ENSDARG00000109661 338.37 2536.13 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
47. zgc:112425 zgc:112425 325.44 2439.22
48. rpl27 ENSDARG00000015128 316.82 2374.61 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
49. rplp1 ENSDARG00000021864 312.51 2342.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. rps15a ENSDARG00000010160 310.35 2326.12 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
51. rpl15 ENSDARG00000009285 306.04 2293.81 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
52. fabp3 ENSDARG00000023290 303.89 2277.70 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
53. rps12 ENSDARG00000036875, ENSDARG00000115157 301.73 2261.51 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
54. rps14 ENSDARG00000036629 301.73 2261.51 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
55. rps29 ENSDARG00000041232 301.73 2261.51 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
56. eif5a ENSDARG00000017235 299.58 2245.39 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
57. rpl11 ENSDARG00000043509 299.58 2245.39 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. rps6 ENSDARG00000019778 299.58 2245.39 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
59. pabpc1a ENSDARG00000017219 293.11 2196.90 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
60. rps4x ENSDARG00000014690 293.11 2196.90 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
61. rpl36 ENSDARG00000100588 290.96 2180.79 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
62. rps15 ENSDARG00000070849, ENSDARG00000110979 290.96 2180.79 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
63. rps27a ENSDARG00000032725, ENSDARG00000114059 288.80 2164.60 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
64. rps20 ENSDARG00000036044 282.34 2116.18 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. si:dkey-150i13.2 ENSDARG00000071052 278.02 2083.80 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
66. RPL29 ENSDARG00000077717 273.71 2051.49 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
67. tnni2b.1 ENSDARG00000035958 271.56 2035.38 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
68. rps10 ENSDARG00000034897 265.09 1986.89 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
69. tnnt2c ENSDARG00000032242 265.09 1986.89 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
70. rplp0 ENSDARG00000051783 262.94 1970.77 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
71. acta1b ENSDARG00000055618 260.78 1954.58 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
72. ptmab ENSDARG00000101766 254.32 1906.16 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
73. tpm3 ENSDARG00000005162 252.16 1889.97 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
74. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 250.01 1873.86 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
75. rpsa ENSDARG00000019181 241.39 1809.25 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
76. rps3 ENSDARG00000103007 239.23 1793.06 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
77. rpl6 ENSDARG00000058451 237.08 1776.95 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
78. si:dkeyp-86f7.3 si:dkeyp-86f7.3 237.08 1776.95
79. rps9 ENSDARG00000011405, ENSDARG00000113248 232.77 1744.64 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. rps24 ENSDARG00000039347 230.61 1728.45 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
81. faua ENSDARG00000099022 228.45 1712.26 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
82. rpl7 ENSDARG00000007320 224.14 1679.96 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
83. cfl1l ENSDARG00000012972 219.83 1647.66 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
84. rpl18 ENSDARG00000029533 217.68 1631.54 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
85. atp5g3b 215.52 1615.35 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
86. rps5 ENSDARG00000043453 213.37 1599.24 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
87. rps19 ENSDARG00000030602 211.21 1583.05 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
88. rps27.1 ENSDARG00000023298 211.21 1583.05 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
89. rpl39 ENSDARG00000036316, ENSDARG00000117167 206.90 1550.74 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
90. cox8a ENSDARG00000095273 204.75 1534.63 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
91. efemp2a ENSDARG00000094324 202.59 1518.44 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
92. cirbp cirbp 196.13 1470.02
93. hsp90ab1 ENSDARG00000029150 196.13 1470.02 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
94. rpl17 ENSDARG00000057556 191.82 1437.72 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
95. rps27.2 ENSDARG00000055475 191.82 1437.72 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
96. si:ch1073-429i10.3 191.82 1437.72 si:ch1073-429i10.3, transcript variant X2
97. npm1a ENSDARG00000014329, ENSDARG00000113199 189.66 1421.53 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
98. ttna ttna 187.51 1405.41
99. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 185.35 1389.22 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
100. krt8 ENSDARG00000058358, ENSDARG00000109279 185.35 1389.22 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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