Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s16.

Sample reads: 133,407. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16000.25 119935.81
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3328.28 24948.36 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1447.08 10847.12 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-nd4 ENSDARG00000063917 1189.82 8918.74 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
5. si:dkey-151g10.6 si:dkey-151g10.6 1127.51 8451.67
6. mt-co3 ENSDARG00000063912 1059.18 7939.48 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
7. eef1a1l1 ENSDARG00000020850 1025.01 7683.34 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. tpma ENSDARG00000033683 1000.89 7502.54 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
9. mt-co2 ENSDARG00000063908 940.60 7050.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. actb2 ENSDARG00000037870 936.58 7020.48 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. ppiaa ENSDARG00000009212 826.04 6191.89 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. tmsb4x ENSDARG00000077777 771.77 5785.09 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mt-atp6 ENSDARG00000063911 743.64 5574.23 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. actc1b ENSDARG00000099197 699.42 5242.76 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. hspa8 ENSDARG00000068992, ENSDARG00000114726 687.36 5152.36 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
16. rpl10a ENSDARG00000042905, ENSDARG00000115649 639.13 4790.84 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
17. eef2b ENSDARG00000100371, ENSDARG00000109247 625.06 4685.37 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
18. zgc:66286 zgc:66286 608.98 4564.84
19. zgc:112425 zgc:112425 594.91 4459.37
20. btf3 ENSDARG00000035400, ENSDARG00000116462 580.84 4353.90 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
21. ckma ENSDARG00000035327, ENSDARG00000114671 572.80 4293.63 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
22. acta1a ENSDARG00000036371 556.72 4173.10 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
23. rpl18a ENSDARG00000025073 522.56 3917.04 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. ckmb ENSDARG00000040565 520.55 3901.98 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 518.54 3886.91 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. myl10 ENSDARG00000062592 502.46 3766.38 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
27. mt-nd1 ENSDARG00000063895 500.45 3751.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
28. hsp90aa1.1 ENSDARG00000010478 442.16 3314.37 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
29. rpl26 ENSDARG00000102317 440.15 3299.31 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
30. hmga1a ENSDARG00000028335 436.13 3269.17 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. rpl8 ENSDARG00000014867 434.12 3254.11 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 432.11 3239.04 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. atp2a1 ENSDARG00000020574 424.07 3178.77 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
34. hbbe3 ENSDARG00000038147, ENSDARG00000109344 422.06 3163.71 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
35. efemp2a ENSDARG00000094324 399.96 2998.05 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 399.96 2998.05 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. mt-cyb ENSDARG00000063924 389.91 2922.72 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
38. rps23 ENSDARG00000021838 373.83 2802.18 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
39. rps26l ENSDARG00000030408 369.81 2772.05 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
40. rpl19 ENSDARG00000013307 367.80 2756.98 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
41. rpl9 ENSDARG00000037350, ENSDARG00000112384 351.72 2636.45 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
42. rps14 ENSDARG00000036629 349.71 2621.38 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
43. rplp1 ENSDARG00000021864 345.69 2591.25 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
44. eif5a ENSDARG00000017235 343.68 2576.18 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
45. rpl11 ENSDARG00000043509 335.64 2515.91 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
46. rpl27 ENSDARG00000015128 335.64 2515.91 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
47. tnnc2 ENSDARG00000070835, ENSDARG00000111155 327.60 2455.65 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
48. fabp3 ENSDARG00000023290 319.56 2395.38 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
49. id1 ENSDARG00000040764 317.55 2380.31 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
50. pabpc1a ENSDARG00000017219 317.55 2380.31 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
51. rps27a ENSDARG00000032725, ENSDARG00000114059 315.54 2365.25 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
52. mylz3 ENSDARG00000017441 311.52 2335.11 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
53. rpl15 ENSDARG00000009285 301.47 2259.78 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
54. rps29 ENSDARG00000041232 295.44 2214.58 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
55. rps3 ENSDARG00000103007 283.39 2124.25 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
56. tnni2b.1 ENSDARG00000035958 281.38 2109.19 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
57. rplp0 ENSDARG00000051783 275.35 2063.99 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
58. tnnt2c ENSDARG00000032242 273.34 2048.92 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
59. rpl23 ENSDARG00000053457 271.33 2033.85 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
60. rps27.1 ENSDARG00000023298 271.33 2033.85 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
61. rps20 ENSDARG00000036044 269.32 2018.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
62. rps6 ENSDARG00000019778 269.32 2018.79 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
63. rps15a ENSDARG00000010160 267.31 2003.72 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
64. RPL29 ENSDARG00000077717 265.30 1988.65 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
65. rpl36 ENSDARG00000100588 263.29 1973.59 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
66. rps9 ENSDARG00000011405, ENSDARG00000113248 261.28 1958.52 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
67. rpl5b ENSDARG00000015862, ENSDARG00000109661 251.23 1883.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
68. rpl7 ENSDARG00000007320 249.22 1868.12 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. rpsa ENSDARG00000019181 249.22 1868.12 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
70. rps12 ENSDARG00000036875, ENSDARG00000115157 247.21 1853.05 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
71. rps2 ENSDARG00000077291 239.17 1792.79 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. rps15 ENSDARG00000070849, ENSDARG00000110979 237.16 1777.72 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. smyhc1 ENSDARG00000099959, ENSDARG00000115916 237.16 1777.72 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
74. hbae3 ENSDARG00000079305 233.14 1747.59 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
75. tpm3 ENSDARG00000005162 233.14 1747.59 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
76. si:dkey-150i13.2 ENSDARG00000071052 231.13 1732.52 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
77. cfl1l ENSDARG00000012972 229.12 1717.45 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
78. krt8 ENSDARG00000058358, ENSDARG00000109279 227.11 1702.39 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
79. rps13 ENSDARG00000036298, ENSDARG00000112818 227.11 1702.39 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
80. rps4x ENSDARG00000014690 227.11 1702.39 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
81. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 225.10 1687.32 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
82. myhz2 ENSDARG00000012944 225.10 1687.32 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
83. acta1b ENSDARG00000055618 223.09 1672.25 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
84. rps24 ENSDARG00000039347 223.09 1672.25 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
85. ttna ttna 223.09 1672.25
86. rpl17 ENSDARG00000057556 221.08 1657.19 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
87. rpl14 ENSDARG00000103433 219.07 1642.12 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
88. ptmab ENSDARG00000101766 217.06 1627.05 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
89. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 215.05 1611.99 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
90. aldoaa ENSDARG00000011665 211.03 1581.85 aldolase a, fructose-bisphosphate, a [Source:ZFIN;Acc:ZDB-GENE-030131-8369]
91. si:ch1073-429i10.3 211.03 1581.85 si:ch1073-429i10.3, transcript variant X2
92. si:dkeyp-86f7.3 si:dkeyp-86f7.3 207.01 1551.72
93. rps10 ENSDARG00000034897 205.00 1536.65 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
94. rps5 ENSDARG00000043453 200.98 1506.52 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
95. rpl18 ENSDARG00000029533 198.97 1491.45 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. rpl39 ENSDARG00000036316, ENSDARG00000117167 198.97 1491.45 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
97. cd81 cd81 196.96 1476.39
98. faua ENSDARG00000099022 196.96 1476.39 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
99. hsp90ab1 ENSDARG00000029150 196.96 1476.39 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
100. rps19 ENSDARG00000030602 196.96 1476.39 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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