Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s15.

Sample reads: 133,416. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 16571.80 124211.35
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3510.52 26312.56 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1291.61 9681.06 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. si:dkey-151g10.6 si:dkey-151g10.6 1080.16 8096.17
5. tpma ENSDARG00000033683 965.52 7236.90 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. mt-nd4 ENSDARG00000063917 934.95 7007.77 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. ppiaa ENSDARG00000009212 932.40 6988.66 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. actb2 ENSDARG00000037870 922.21 6912.28 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. mt-co2 ENSDARG00000063908 919.67 6893.24 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. mt-co3 ENSDARG00000063912 912.02 6835.90 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. eef1a1l1 ENSDARG00000020850 792.29 5938.49 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. tmsb4x ENSDARG00000077777 764.26 5728.39 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
13. mt-atp6 ENSDARG00000063911 690.39 5174.71 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
14. hmga1a ENSDARG00000028335 624.15 4678.22 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
15. actc1b ENSDARG00000099197 621.60 4659.11 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. zgc:112425 zgc:112425 591.03 4429.97
17. eef2b ENSDARG00000100371, ENSDARG00000109247 588.48 4410.86 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
18. hbbe3 ENSDARG00000038147, ENSDARG00000109344 580.84 4353.60 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
19. actb1 ENSDARG00000037746, ENSDARG00000113649 565.56 4239.07 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 540.08 4048.09 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. mt-nd1 ENSDARG00000063895 514.60 3857.10 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. rpl18a ENSDARG00000025073 512.06 3838.07 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
23. ckma ENSDARG00000035327, ENSDARG00000114671 506.96 3799.84 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
24. hsp90aa1.1 ENSDARG00000010478 501.87 3761.69 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
25. zgc:66286 zgc:66286 476.39 3570.71
26. acta1a ENSDARG00000036371 471.30 3532.56 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. rpl26 ENSDARG00000102317 468.75 3513.44 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
28. rpl8 ENSDARG00000014867 466.20 3494.33 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. btf3 ENSDARG00000035400, ENSDARG00000116462 463.65 3475.22 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
30. rpl23 ENSDARG00000053457 450.92 3379.80 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. rps14 ENSDARG00000036629 450.92 3379.80 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
32. efemp2a ENSDARG00000094324 443.27 3322.46 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 435.63 3265.20 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. rpl21 ENSDARG00000010516, ENSDARG00000110263 430.54 3227.05 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
35. myl10 ENSDARG00000062592 425.44 3188.82 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
36. ckmb ENSDARG00000040565 417.80 3131.55 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
37. fabp3 ENSDARG00000023290 402.51 3016.95 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
38. rpl9 ENSDARG00000037350, ENSDARG00000112384 387.23 2902.42 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
39. hbae3 ENSDARG00000079305 379.58 2845.08 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
40. atp2a1 ENSDARG00000020574 371.94 2787.82 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
41. rps23 ENSDARG00000021838 371.94 2787.82 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. rpl36a ENSDARG00000058105, ENSDARG00000112656 364.30 2730.55 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
43. rps26l ENSDARG00000030408 351.56 2635.06 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
44. tnnc2 ENSDARG00000070835, ENSDARG00000111155 351.56 2635.06 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
45. rplp1 ENSDARG00000021864 331.18 2482.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
46. mt-cyb ENSDARG00000063924 326.09 2444.16 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
47. id1 ENSDARG00000040764 323.54 2425.04 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
48. pabpc1a ENSDARG00000017219 323.54 2425.04 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
49. rpl19 ENSDARG00000013307 323.54 2425.04 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
50. rpl27 ENSDARG00000015128 310.80 2329.55 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
51. mylz3 ENSDARG00000017441 305.71 2291.40 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
52. eif5a ENSDARG00000017235 300.61 2253.18 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
53. rpl11 ENSDARG00000043509 292.97 2195.91 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. rplp0 ENSDARG00000051783 290.42 2176.80 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
55. rps27a ENSDARG00000032725, ENSDARG00000114059 290.42 2176.80 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
56. rps27.1 ENSDARG00000023298 282.78 2119.53 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
57. RPL29 ENSDARG00000077717 277.68 2081.31 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
58. rpl36 ENSDARG00000100588 270.04 2024.04 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. rps15a ENSDARG00000010160 270.04 2024.04 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
60. si:ch1073-429i10.3 267.49 2004.93 si:ch1073-429i10.3, transcript variant X2
61. rps29 ENSDARG00000041232 262.40 1966.78 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
62. rps9 ENSDARG00000011405, ENSDARG00000113248 262.40 1966.78 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
63. rps2 ENSDARG00000077291 259.85 1947.67 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. ptmab ENSDARG00000101766 257.30 1928.55 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
65. rpl7 ENSDARG00000007320 257.30 1928.55 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
66. rpl5b ENSDARG00000015862, ENSDARG00000109661 254.75 1909.44 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
67. rpl15 ENSDARG00000009285 252.21 1890.40 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
68. rps6 ENSDARG00000019778 252.21 1890.40 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
69. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 247.11 1852.17 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
70. rps15 ENSDARG00000070849, ENSDARG00000110979 247.11 1852.17 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
71. rpsa ENSDARG00000019181 247.11 1852.17 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
72. rps12 ENSDARG00000036875, ENSDARG00000115157 244.56 1833.06 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
73. si:dkey-150i13.2 ENSDARG00000071052 244.56 1833.06 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
74. tnni2b.1 ENSDARG00000035958 239.47 1794.91 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
75. tnnt2c ENSDARG00000032242 239.47 1794.91 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
76. rps20 ENSDARG00000036044 231.83 1737.65 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. AL954137.2 ENSDARG00000114408 229.28 1718.53
78. rps5 ENSDARG00000043453 229.28 1718.53 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
79. si:dkeyp-86f7.3 si:dkeyp-86f7.3 226.73 1699.42
80. hmgn2 ENSDARG00000099572 224.18 1680.31 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
81. tpm3 ENSDARG00000005162 224.18 1680.31 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
82. cfl1l ENSDARG00000012972 221.64 1661.27 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
83. rps10 ENSDARG00000034897 221.64 1661.27 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
84. rps4x ENSDARG00000014690 219.09 1642.16 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
85. rpl18 ENSDARG00000029533 216.54 1623.04 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
86. rps3 ENSDARG00000103007 216.54 1623.04 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
87. rps24 ENSDARG00000039347 213.99 1603.93 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
88. fkbp1aa ENSDARG00000022684 203.80 1527.55 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
89. rpl17 ENSDARG00000057556 203.80 1527.55 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
90. col1a1b ENSDARG00000035809 201.26 1508.51 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
91. pcna ENSDARG00000054155 198.71 1489.40 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
92. rpl34 ENSDARG00000029500 198.71 1489.40 ribosomal protein L34 [Source:ZFIN;Acc:ZDB-GENE-040426-1033]
93. acta1b ENSDARG00000055618 196.16 1470.29 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
94. col1a1a ENSDARG00000012405, ENSDARG00000116113 193.61 1451.17 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
95. npm1a ENSDARG00000014329, ENSDARG00000113199 193.61 1451.17 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
96. rpl39 ENSDARG00000036316, ENSDARG00000117167 193.61 1451.17 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
97. aldoab ENSDARG00000034470 191.07 1432.14 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
98. cd81 cd81 188.52 1413.02
99. faua ENSDARG00000099022 188.52 1413.02 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
100. rps19 ENSDARG00000030602 188.52 1413.02 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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