Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s14.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 15834.58 118707.18
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3773.15 28286.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1267.90 9505.07 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. si:dkey-151g10.6 si:dkey-151g10.6 1202.43 9014.26
5. mt-co2 ENSDARG00000063908 1128.24 8458.08 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd4 ENSDARG00000063917 1112.96 8343.53 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. actb2 ENSDARG00000037870 999.48 7492.81 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. ppiaa ENSDARG00000009212 964.56 7231.02 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. mt-co3 ENSDARG00000063912 905.64 6789.32 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. eef1a1l1 ENSDARG00000020850 883.82 6625.74 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. tmsb4x ENSDARG00000077777 848.90 6363.95 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. mt-atp6 ENSDARG00000063911 722.33 5415.10 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. tpma ENSDARG00000033683 685.23 5136.97 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
14. rpl10a ENSDARG00000042905, ENSDARG00000115649 652.50 4891.60 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
15. eef2b ENSDARG00000100371, ENSDARG00000109247 645.95 4842.50 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
16. hspa8 ENSDARG00000068992, ENSDARG00000114726 606.67 4548.03 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
17. myl10 ENSDARG00000062592 569.57 4269.90 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
18. zgc:66286 zgc:66286 558.66 4188.11
19. actb1 ENSDARG00000037746, ENSDARG00000113649 541.20 4057.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
20. mt-nd1 ENSDARG00000063895 528.11 3959.09 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
21. rps26l ENSDARG00000030408 510.65 3828.19 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
22. rpl8 ENSDARG00000014867 493.19 3697.30 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
23. zgc:112425 zgc:112425 491.01 3680.96
24. rpl18a ENSDARG00000025073 488.83 3664.61 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
25. rpl26 ENSDARG00000102317 482.28 3615.51 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
26. btf3 ENSDARG00000035400, ENSDARG00000116462 477.92 3582.83 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
27. hmga1a ENSDARG00000028335 473.55 3550.06 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
28. actc1b ENSDARG00000099197 467.01 3501.04 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
29. mt-cyb ENSDARG00000063924 447.37 3353.80 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. acta1a ENSDARG00000036371 445.18 3337.38 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
31. rps14 ENSDARG00000036629 440.82 3304.70 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
32. rpl23 ENSDARG00000053457 438.64 3288.35 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. rps23 ENSDARG00000021838 432.09 3239.25 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
34. ckma ENSDARG00000035327, ENSDARG00000114671 419.00 3141.12 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
35. ckmb ENSDARG00000040565 419.00 3141.12 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 414.63 3108.36 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. hsp90aa1.1 ENSDARG00000010478 410.27 3075.67 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
38. id1 ENSDARG00000040764 410.27 3075.67 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
39. rpl19 ENSDARG00000013307 401.54 3010.23 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
40. rpl11 ENSDARG00000043509 397.17 2977.47 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
41. rpl21 ENSDARG00000010516, ENSDARG00000110263 397.17 2977.47 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
42. efemp2a ENSDARG00000094324 370.99 2781.20 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 366.62 2748.44 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. rplp1 ENSDARG00000021864 355.71 2666.65 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. rpl36 ENSDARG00000100588 349.16 2617.55 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 342.62 2568.52 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. rps29 ENSDARG00000041232 336.07 2519.42 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
48. tnnc2 ENSDARG00000070835, ENSDARG00000111155 333.89 2503.07 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
49. rps9 ENSDARG00000011405, ENSDARG00000113248 331.71 2486.73 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
50. rpl27 ENSDARG00000015128 322.98 2421.29 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
51. rpl7 ENSDARG00000007320 314.25 2355.84 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
52. rps27.1 ENSDARG00000023298 314.25 2355.84 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
53. ptmab ENSDARG00000101766 312.07 2339.50 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
54. rpl15 ENSDARG00000009285 303.34 2274.05 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
55. pabpc1a ENSDARG00000017219 298.97 2241.29 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
56. tpm3 ENSDARG00000005162 298.97 2241.29 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
57. hbbe3 ENSDARG00000038147, ENSDARG00000109344 296.79 2224.95 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
58. rps12 ENSDARG00000036875, ENSDARG00000115157 294.61 2208.60 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
59. rps24 ENSDARG00000039347 294.61 2208.60 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
60. rps15a ENSDARG00000010160 290.24 2175.84 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
61. rpl5b ENSDARG00000015862, ENSDARG00000109661 288.06 2159.50 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
62. rps10 ENSDARG00000034897 285.88 2143.16 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
63. rpsa ENSDARG00000019181 281.51 2110.40 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
64. cfl1l ENSDARG00000012972 277.15 2077.71 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
65. rps19 ENSDARG00000030602 274.97 2061.37 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
66. eif5a ENSDARG00000017235 268.42 2012.27 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
67. rplp0 ENSDARG00000051783 261.87 1963.16 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
68. atp2a1 ENSDARG00000020574 250.96 1881.37 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
69. rps5 ENSDARG00000043453 250.96 1881.37 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
70. fabp3 ENSDARG00000023290 248.78 1865.03 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
71. rps2 ENSDARG00000077291 248.78 1865.03 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. rps20 ENSDARG00000036044 248.78 1865.03 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
73. rpl6 ENSDARG00000058451 246.60 1848.69 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
74. rps6 ENSDARG00000019778 246.60 1848.69 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
75. rps15 ENSDARG00000070849, ENSDARG00000110979 244.41 1832.27 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
76. si:ch1073-429i10.3 244.41 1832.27 si:ch1073-429i10.3, transcript variant X2
77. tnnt2c ENSDARG00000032242 244.41 1832.27 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
78. si:dkey-150i13.2 ENSDARG00000071052 240.05 1799.58 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
79. RPL29 ENSDARG00000077717 237.87 1783.24 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
80. rps3 ENSDARG00000103007 235.69 1766.90 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
81. tnni2b.1 ENSDARG00000035958 235.69 1766.90 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
82. rps4x ENSDARG00000014690 233.50 1750.48 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
83. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 229.14 1717.80 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
84. rpl14 ENSDARG00000103433 226.96 1701.45 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
85. hsp90ab1 ENSDARG00000029150 220.41 1652.35 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
86. cfl1 ENSDARG00000021124 218.23 1636.01 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
87. npm1a ENSDARG00000014329, ENSDARG00000113199 216.05 1619.66 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
88. ttna ttna 216.05 1619.66
89. cirbp cirbp 213.86 1603.25
90. si:dkeyp-86f7.3 si:dkeyp-86f7.3 211.68 1586.90
91. faua ENSDARG00000099022 209.50 1570.56 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. rpl39 ENSDARG00000036316, ENSDARG00000117167 205.13 1537.80 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
93. mt-co1 ENSDARG00000063905 200.77 1505.11 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
94. cox8a ENSDARG00000095273 196.40 1472.35 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
95. rpl18 ENSDARG00000029533 196.40 1472.35 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
96. mylz3 ENSDARG00000017441 194.22 1456.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
97. smyhc1 ENSDARG00000099959, ENSDARG00000115916 194.22 1456.01 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
98. atp5g3b 192.04 1439.67 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
99. krt8 ENSDARG00000058358, ENSDARG00000109279 189.86 1423.32 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
100. cyt1l ENSDARG00000036832 187.68 1406.98 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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