Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole3_PA, section s11.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 19133.32 143416.49
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3937.42 29513.48 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. si:dkey-151g10.6 si:dkey-151g10.6 1092.24 8187.04
4. mt-nd2 ENSDARG00000063899 1057.87 7929.41 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. tmsb4x ENSDARG00000077777 996.77 7471.43 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. actb2 ENSDARG00000037870 954.76 7156.54 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
7. eef1a1l1 ENSDARG00000020850 901.29 6755.75 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. mt-nd4 ENSDARG00000063917 901.29 6755.75 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-co3 ENSDARG00000063912 805.81 6040.06 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. ppiaa ENSDARG00000009212 805.81 6040.06 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. mt-co2 ENSDARG00000063908 790.54 5925.60 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
12. zgc:112425 zgc:112425 763.81 5725.25
13. hmga1a ENSDARG00000028335 653.05 4895.03 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
14. hspa8 ENSDARG00000068992, ENSDARG00000114726 622.50 4666.04 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
15. actb1 ENSDARG00000037746, ENSDARG00000113649 595.77 4465.68 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 588.13 4408.41 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. efemp2a ENSDARG00000094324 580.49 4351.14 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
18. id1 ENSDARG00000040764 580.49 4351.14 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 530.84 3978.99 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. rpl23 ENSDARG00000053457 527.03 3950.43 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
21. mt-atp6 ENSDARG00000063911 519.39 3893.16 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
22. zgc:66286 zgc:66286 488.84 3664.17
23. btf3 ENSDARG00000035400, ENSDARG00000116462 477.38 3578.27 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
24. tpma ENSDARG00000033683 439.19 3292.01 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
25. rpl21 ENSDARG00000010516, ENSDARG00000110263 416.27 3120.21 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
26. acta1a ENSDARG00000036371 370.45 2776.76 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
27. rpl9 ENSDARG00000037350, ENSDARG00000112384 370.45 2776.76 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
28. rps14 ENSDARG00000036629 362.81 2719.49 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
29. hsp90aa1.1 ENSDARG00000010478 358.99 2690.86 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
30. rpl18a ENSDARG00000025073 358.99 2690.86 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
31. rpl8 ENSDARG00000014867 347.53 2604.96 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
32. mt-nd1 ENSDARG00000063895 339.89 2547.69 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. myl10 ENSDARG00000062592 339.89 2547.69 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
34. rpl26 ENSDARG00000102317 336.07 2519.06 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. rps23 ENSDARG00000021838 328.44 2461.87 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. eif5a ENSDARG00000017235 320.80 2404.60 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
37. rpl11 ENSDARG00000043509 316.98 2375.97 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
38. rpl36a ENSDARG00000058105, ENSDARG00000112656 316.98 2375.97 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
39. rplp0 ENSDARG00000051783 316.98 2375.97 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
40. rps12 ENSDARG00000036875, ENSDARG00000115157 316.98 2375.97 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
41. ptmab ENSDARG00000101766 313.16 2347.33 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
42. rpl19 ENSDARG00000013307 313.16 2347.33 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
43. cfl1l ENSDARG00000012972 309.34 2318.70 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
44. actc1b ENSDARG00000099197 305.52 2290.07 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
45. rpl15 ENSDARG00000009285 290.25 2175.61 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
46. fabp3 ENSDARG00000023290 282.61 2118.34 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
47. rps26l ENSDARG00000030408 278.79 2089.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 274.97 2061.08 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
49. rps15 ENSDARG00000070849, ENSDARG00000110979 271.15 2032.44 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
50. rps2 ENSDARG00000077291 271.15 2032.44 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
51. rps29 ENSDARG00000041232 271.15 2032.44 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
52. cd81 cd81 263.51 1975.18
53. rpl36 ENSDARG00000100588 263.51 1975.18 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
54. rps5 ENSDARG00000043453 263.51 1975.18 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
55. si:dkey-150i13.2 ENSDARG00000071052 263.51 1975.18 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
56. pabpc1a ENSDARG00000017219 259.69 1946.54 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
57. rpl27 ENSDARG00000015128 259.69 1946.54 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
58. hnrnpab hnrnpab 255.87 1917.91
59. rplp1 ENSDARG00000021864 255.87 1917.91 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
60. si:ch1073-429i10.3 255.87 1917.91 si:ch1073-429i10.3, transcript variant X2
61. hsp90ab1 ENSDARG00000029150 252.06 1889.35 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
62. mt-cyb ENSDARG00000063924 252.06 1889.35 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
63. rps20 ENSDARG00000036044 252.06 1889.35 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
64. rps4x ENSDARG00000014690 252.06 1889.35 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
65. rpl6 ENSDARG00000058451 244.42 1832.08 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
66. rps27a ENSDARG00000032725, ENSDARG00000114059 244.42 1832.08 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
67. rpsa ENSDARG00000019181 244.42 1832.08 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
68. rpl5b ENSDARG00000015862, ENSDARG00000109661 240.60 1803.45 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
69. rpl7 ENSDARG00000007320 240.60 1803.45 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
70. tpm3 ENSDARG00000005162 240.60 1803.45 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
71. hmgn2 ENSDARG00000099572 236.78 1774.82 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
72. rps19 ENSDARG00000030602 236.78 1774.82 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
73. rps10 ENSDARG00000034897 232.96 1746.18 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
74. rpl18 ENSDARG00000029533 229.14 1717.55 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
75. rps9 ENSDARG00000011405, ENSDARG00000113248 229.14 1717.55 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
76. si:dkeyp-86f7.3 si:dkeyp-86f7.3 229.14 1717.55
77. AL954137.2 ENSDARG00000114408 225.32 1688.92
78. fkbp1aa ENSDARG00000022684 221.50 1660.28 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
79. rps27.2 ENSDARG00000055475 221.50 1660.28 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
80. faua ENSDARG00000099022 213.87 1603.09 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
81. krt8 ENSDARG00000058358, ENSDARG00000109279 213.87 1603.09 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
82. rps27.1 ENSDARG00000023298 213.87 1603.09 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
83. rps3 ENSDARG00000103007 213.87 1603.09 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
84. tnnc2 ENSDARG00000070835, ENSDARG00000111155 213.87 1603.09 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
85. hnrnpa0a ENSDARG00000089302 210.05 1574.46 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
86. rps15a ENSDARG00000010160 206.23 1545.83 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. rps24 ENSDARG00000039347 206.23 1545.83 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
88. pnrc2 ENSDARG00000053291, ENSDARG00000112537 202.41 1517.19 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
89. ttna ttna 202.41 1517.19
90. col1a1a ENSDARG00000012405, ENSDARG00000116113 198.59 1488.56 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
91. rps6 ENSDARG00000019778 198.59 1488.56 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
92. ckmb ENSDARG00000040565 194.77 1459.93 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
93. rpl14 ENSDARG00000103433 194.77 1459.93 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
94. col2a1a ENSDARG00000069093, ENSDARG00000111202 187.13 1402.66 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
95. rpl39 ENSDARG00000036316, ENSDARG00000117167 183.31 1374.03 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
96. ckma ENSDARG00000035327, ENSDARG00000114671 179.49 1345.39 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
97. zgc:123194 zgc:123194 179.49 1345.39
98. AC024175.17 AC024175.17 175.68 1316.83
99. rps18 ENSDARG00000100392 175.68 1316.83 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
100. rpl24 ENSDARG00000099104 171.86 1288.20 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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