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Experiment Zebrafish_28hpf_whole3_PA, section s1.

Sample reads: 133,415. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23617.55 177023.49
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4514.87 33840.85 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 2094.97 15702.68
4. tmsb4x ENSDARG00000077777 1436.55 10767.55 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. si:dkey-151g10.6 si:dkey-151g10.6 897.84 6729.69
6. mt-co2 ENSDARG00000063908 863.64 6473.35 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. actb2 ENSDARG00000037870 829.44 6217.00 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. eef1a1l1 ENSDARG00000020850 786.68 5896.50 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
9. apoeb ENSDARG00000040295 726.83 5447.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
10. ppiaa ENSDARG00000009212 679.80 5095.39 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. eef2b ENSDARG00000100371, ENSDARG00000109247 662.69 4967.14 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
12. hmga1a ENSDARG00000028335 628.49 4710.80 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
13. mt-co3 ENSDARG00000063912 619.94 4646.71 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. si:dkey-150i13.2 ENSDARG00000071052 619.94 4646.71 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
15. actb1 ENSDARG00000037746, ENSDARG00000113649 615.66 4614.63 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
16. id1 ENSDARG00000040764 615.66 4614.63 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
17. hspa8 ENSDARG00000068992, ENSDARG00000114726 611.39 4582.63 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 594.29 4454.45 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. ptmab ENSDARG00000101766 590.01 4422.37 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
20. zgc:92061 zgc:92061 547.26 4101.94
21. mt-nd2 ENSDARG00000063899 525.88 3941.69 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
22. mt-nd4 ENSDARG00000063917 448.92 3364.84 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
23. rpl23 ENSDARG00000053457 448.92 3364.84 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
24. cfl1l ENSDARG00000012972 431.82 3236.67 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
25. rpl18a ENSDARG00000025073 431.82 3236.67 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. rpl26 ENSDARG00000102317 414.72 3108.50 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
27. zgc:112425 zgc:112425 406.17 3044.42
28. rpl21 ENSDARG00000010516, ENSDARG00000110263 389.07 2916.24 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
29. rpl8 ENSDARG00000014867 384.79 2884.16 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. btf3 ENSDARG00000035400, ENSDARG00000116462 380.51 2852.08 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
31. hsp90ab1 ENSDARG00000029150 376.24 2820.08 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
32. rpl9 ENSDARG00000037350, ENSDARG00000112384 371.96 2788.00 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
33. rps14 ENSDARG00000036629 333.48 2499.57 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
34. rpl19 ENSDARG00000013307 329.21 2467.57 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
35. col1a1a ENSDARG00000012405, ENSDARG00000116113 316.38 2371.40 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
36. rps26l ENSDARG00000030408 316.38 2371.40 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
37. rps29 ENSDARG00000041232 316.38 2371.40 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
38. hmgn2 ENSDARG00000099572 312.11 2339.40 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
39. rps23 ENSDARG00000021838 303.56 2275.31 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
40. si:ch1073-429i10.3 299.28 2243.23 si:ch1073-429i10.3, transcript variant X2
41. krt8 ENSDARG00000058358, ENSDARG00000109279 295.01 2211.22 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
42. mt-atp6 ENSDARG00000063911 295.01 2211.22 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
43. rps27a ENSDARG00000032725, ENSDARG00000114059 286.45 2147.06 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 277.90 2082.98 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. rps15 ENSDARG00000070849, ENSDARG00000110979 277.90 2082.98 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
46. rps15a ENSDARG00000010160 277.90 2082.98 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
47. pabpc1a ENSDARG00000017219 273.63 2050.97 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
48. rpl11 ENSDARG00000043509 273.63 2050.97 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. rps2 ENSDARG00000077291 269.35 2018.89 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
50. mt-cyb ENSDARG00000063924 265.08 1986.89 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
51. rpl15 ENSDARG00000009285 265.08 1986.89 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
52. rpl36 ENSDARG00000100588 265.08 1986.89 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
53. bcam ENSDARG00000090190 260.80 1954.81 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
54. rplp1 ENSDARG00000021864 260.80 1954.81 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. hoxc13a ENSDARG00000070353 252.25 1890.72 homeobox C13a [Source:ZFIN;Acc:ZDB-GENE-000822-4]
56. rpl27 ENSDARG00000015128 247.98 1858.71 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
57. AL954137.2 ENSDARG00000114408 243.70 1826.63
58. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 243.70 1826.63 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
59. rpl7 ENSDARG00000007320 243.70 1826.63 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
60. rps12 ENSDARG00000036875, ENSDARG00000115157 243.70 1826.63 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
61. rps20 ENSDARG00000036044 243.70 1826.63 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
62. eif5a ENSDARG00000017235 235.15 1762.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
63. rps10 ENSDARG00000034897 235.15 1762.55 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
64. rps27.1 ENSDARG00000023298 235.15 1762.55 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
65. faua ENSDARG00000099022 230.87 1730.47 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
66. rplp0 ENSDARG00000051783 230.87 1730.47 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
67. pnrc2 ENSDARG00000053291, ENSDARG00000112537 226.60 1698.46 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
68. AC024175.17 AC024175.17 222.32 1666.38
69. RPL29 ENSDARG00000077717 222.32 1666.38 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
70. rpl18 ENSDARG00000029533 213.77 1602.30 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
71. rpsa ENSDARG00000019181 213.77 1602.30 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
72. cirbp cirbp 209.50 1570.29
73. rps6 ENSDARG00000019778 209.50 1570.29 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
74. si:dkeyp-86f7.3 si:dkeyp-86f7.3 209.50 1570.29
75. rps9 ENSDARG00000011405, ENSDARG00000113248 205.22 1538.21 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
76. CABZ01074130.1 ENSDARG00000105274 200.95 1506.20
77. krt18 ENSDARG00000018404, ENSDARG00000109528 200.95 1506.20 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
78. mt-nd1 ENSDARG00000063895 200.95 1506.20 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
79. rps19 ENSDARG00000030602 200.95 1506.20 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
80. khdrbs1a ENSDARG00000052856 196.67 1474.12 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
81. rpl5b ENSDARG00000015862, ENSDARG00000109661 196.67 1474.12 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
82. rps5 ENSDARG00000043453 188.12 1410.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. rps4x ENSDARG00000014690 183.84 1377.96 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. rpl17 ENSDARG00000057556 179.57 1345.95 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
85. rpl6 ENSDARG00000058451 179.57 1345.95 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
86. zgc:153129 zgc:153129 179.57 1345.95
87. ntd5 ENSDARG00000040944 175.29 1313.87 ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
88. rps3 ENSDARG00000103007 175.29 1313.87 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
89. frem2a ENSDARG00000076856 171.02 1281.87 Fras1 related extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-081119-3]
90. hnrnpab hnrnpab 171.02 1281.87
91. ubc ENSDARG00000102632 171.02 1281.87 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
92. cox8a ENSDARG00000095273 166.74 1249.79 cytochrome c oxidase subunit 8A [Source:ZFIN;Acc:ZDB-GENE-030131-9136]
93. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 166.74 1249.79 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
94. zgc:56493 ENSDARG00000031435 166.74 1249.79 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
95. rpl28 ENSDARG00000005791 162.47 1217.78 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
96. capns1b ENSDARG00000013804 158.19 1185.70 calpain, small subunit 1 b [Source:ZFIN;Acc:ZDB-GENE-030131-5206]
97. efemp2a ENSDARG00000094324 158.19 1185.70 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
98. fkbp1aa ENSDARG00000022684 158.19 1185.70 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
99. h3f3a 158.19 1185.70 H3 histone, family 3A, transcript variant X1
100. myl12.1 ENSDARG00000099766 158.19 1185.70 myosin, light chain 12, genome duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4918]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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