Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s8.

Sample reads: 133,400. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5968.93 44744.54
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2342.64 17560.99 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1765.01 13230.94 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. eef2b ENSDARG00000100371, ENSDARG00000109247 1636.64 12268.65 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
5. mt-nd4 ENSDARG00000063917 1476.19 11065.88 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. mt-co2 ENSDARG00000063908 1219.46 9141.37 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-co3 ENSDARG00000063912 1091.09 8179.07 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. hmga1a ENSDARG00000028335 994.82 7457.41 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. mt-atp6 ENSDARG00000063911 930.64 6976.30 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. tmsb4x ENSDARG00000077777 866.46 6495.19 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. zgc:112425 zgc:112425 866.46 6495.19
12. hsp90ab1 ENSDARG00000029150 834.37 6254.64 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
13. ppiaa ENSDARG00000009212 770.18 5773.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
14. eef1a1l1 ENSDARG00000020850 738.09 5532.90 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. actb2 ENSDARG00000037870 706.00 5292.35 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. hmgn2 ENSDARG00000099572 706.00 5292.35 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
17. AL954137.2 ENSDARG00000114408 641.82 4811.24
18. rpl18a ENSDARG00000025073 545.55 4089.57 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
19. rpl8 ENSDARG00000014867 545.55 4089.57 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
20. mt-cyb ENSDARG00000063924 513.46 3849.02 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. mt-nd1 ENSDARG00000063895 513.46 3849.02 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
22. ptmab ENSDARG00000101766 513.46 3849.02 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
23. cfl1 ENSDARG00000021124 481.37 3608.47 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
24. rplp1 ENSDARG00000021864 481.37 3608.47 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 449.27 3367.84 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. eif5a ENSDARG00000017235 449.27 3367.84 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
27. pcna ENSDARG00000054155 449.27 3367.84 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
28. rplp0 ENSDARG00000051783 449.27 3367.84 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
29. pabpc1a ENSDARG00000017219 417.18 3127.28 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 417.18 3127.28 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. rps2 ENSDARG00000077291 417.18 3127.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 385.09 2886.73 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. rpl27 ENSDARG00000015128 385.09 2886.73 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
34. rps20 ENSDARG00000036044 385.09 2886.73 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
35. si:dkeyp-86f7.3 si:dkeyp-86f7.3 385.09 2886.73
36. tuba8l4 ENSDARG00000006260 385.09 2886.73 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
37. marcksb ENSDARG00000008803 353.00 2646.17 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
38. rpl26 ENSDARG00000102317 353.00 2646.17 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. rpl35a ENSDARG00000088030 353.00 2646.17 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
40. rpl7 ENSDARG00000007320 353.00 2646.17 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
41. cirbp cirbp 320.91 2405.62
42. fth1a ENSDARG00000015551 320.91 2405.62 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
43. rpl6 ENSDARG00000058451 320.91 2405.62 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
44. rps10 ENSDARG00000034897 320.91 2405.62 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
45. rps3 ENSDARG00000103007 320.91 2405.62 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
46. rps4x ENSDARG00000014690 320.91 2405.62 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
47. rps5 ENSDARG00000043453 320.91 2405.62 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
48. RPL29 ENSDARG00000077717 288.82 2165.06 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
49. fabp3 ENSDARG00000023290 288.82 2165.06 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
50. id1 ENSDARG00000040764 288.82 2165.06 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
51. pbx4 ENSDARG00000052150 288.82 2165.06 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
52. rbm4.3 ENSDARG00000022129 288.82 2165.06 RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
53. rpl31 ENSDARG00000053365 288.82 2165.06 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
54. rps15a ENSDARG00000010160 288.82 2165.06 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
55. rps26l ENSDARG00000030408 288.82 2165.06 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 288.82 2165.06 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. rps9 ENSDARG00000011405, ENSDARG00000113248 288.82 2165.06 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
58. rpsa ENSDARG00000019181 288.82 2165.06 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
59. setb ENSDARG00000003920 288.82 2165.06 SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
60. gnb2l1 256.73 1924.51 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
61. h3f3a 256.73 1924.51 H3 histone, family 3A, transcript variant X1
62. rpl35 ENSDARG00000018334 256.73 1924.51 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
63. rpl36 ENSDARG00000100588 256.73 1924.51 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. rps14 ENSDARG00000036629 256.73 1924.51 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
65. spna2 256.73 1924.51 spectrin alpha 2, transcript variant X12
66. stmn1a ENSDARG00000004169 256.73 1924.51 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
67. tpma ENSDARG00000033683 256.73 1924.51 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
68. tuba8l ENSDARG00000042708 256.73 1924.51 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
69. uba52 ENSDARG00000041435 256.73 1924.51 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
70. ubc ENSDARG00000102632 256.73 1924.51 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
71. ATP5B 224.64 1683.96 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
72. apoa1b ENSDARG00000101324 224.64 1683.96 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
73. ccnd1 ENSDARG00000101637 224.64 1683.96 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
74. cfl1l ENSDARG00000012972 224.64 1683.96 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
75. cyt1l ENSDARG00000036832 224.64 1683.96 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
76. fkbp1aa ENSDARG00000022684 224.64 1683.96 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
77. hnrnpa0a ENSDARG00000089302 224.64 1683.96 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
78. nop56 ENSDARG00000012820 224.64 1683.96 NOP56 ribonucleoprotein homolog [Source:ZFIN;Acc:ZDB-GENE-040109-1]
79. rpl10a ENSDARG00000042905, ENSDARG00000115649 224.64 1683.96 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
80. rpl14 ENSDARG00000103433 224.64 1683.96 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
81. rpl23 ENSDARG00000053457 224.64 1683.96 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
82. rps6 ENSDARG00000019778 224.64 1683.96 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
83. seta ENSDARG00000031495 224.64 1683.96 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
84. BX511252.1 BX511252.1 192.55 1443.40
85. CORO1C CORO1C 192.55 1443.40
86. RPS17L RPS17L 192.55 1443.40
87. apoc1l apoc1l 192.55 1443.40
88. ckmb ENSDARG00000040565 192.55 1443.40 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
89. gch2 ENSDARG00000099101 192.55 1443.40 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
90. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 192.55 1443.40 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
91. hmgb3a ENSDARG00000056725 192.55 1443.40 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
92. hnrnpub ENSDARG00000004735 192.55 1443.40 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
93. khdrbs1a ENSDARG00000052856 192.55 1443.40 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
94. marcksl1b ENSDARG00000035715 192.55 1443.40 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
95. mcm4 ENSDARG00000040041 192.55 1443.40 minichromosome maintenance complex component 4 [Source:ZFIN;Acc:ZDB-GENE-030131-9544]
96. mt-co1 ENSDARG00000063905 192.55 1443.40 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
97. nme2b.2 ENSDARG00000099420 192.55 1443.40 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
98. rpl18 ENSDARG00000029533 192.55 1443.40 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
99. rpl19 ENSDARG00000013307 192.55 1443.40 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
100. rpl36a ENSDARG00000058105, ENSDARG00000112656 192.55 1443.40 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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