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Experiment Zebrafish_28hpf_whole2, section s71.

Sample reads: 133,389. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 4304.63 32277.10 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tmsb4x ENSDARG00000077777 2439.84 18294.48 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. mt-co2 ENSDARG00000063908 1412.97 10594.77 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. apoc1l apoc1l 1371.89 10286.75
5. AC024175.4 AC024175.4 1232.24 9239.62
6. zgc:112425 zgc:112425 1150.09 8623.64
7. eef1a1l1 ENSDARG00000020850 1059.73 7946.10 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. hmga1a ENSDARG00000028335 944.72 7083.73 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 895.43 6714.14 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. mt-co3 ENSDARG00000063912 879.00 6590.94 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. si:dkey-151g10.6 si:dkey-151g10.6 870.78 6529.31
12. col1a1a ENSDARG00000012405, ENSDARG00000116113 837.92 6282.92 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
13. ppiaa ENSDARG00000009212 837.92 6282.92 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
14. actb2 ENSDARG00000037870 821.49 6159.72 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. mt-nd2 ENSDARG00000063899 788.63 5913.33 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
16. rps23 ENSDARG00000021838 780.42 5851.77 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
17. rpl8 ENSDARG00000014867 763.99 5728.57 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 706.48 5297.35 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. rpl26 ENSDARG00000102317 698.27 5235.79 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
20. rpl23 ENSDARG00000053457 690.05 5174.15 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
21. rpl18a ENSDARG00000025073 681.84 5112.59 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
22. rps27a ENSDARG00000032725, ENSDARG00000114059 632.55 4743.00 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
23. rpl21 ENSDARG00000010516, ENSDARG00000110263 624.34 4681.44 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
24. ptmab ENSDARG00000101766 616.12 4619.81 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
25. apoeb ENSDARG00000040295 566.83 4250.22 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
26. rps26l ENSDARG00000030408 566.83 4250.22 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
27. efemp2a ENSDARG00000094324 533.97 4003.83 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
28. mt-nd4 ENSDARG00000063917 533.97 4003.83 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
29. rpl27 ENSDARG00000015128 533.97 4003.83 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
30. rpl9 ENSDARG00000037350, ENSDARG00000112384 533.97 4003.83 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
31. rpl36 ENSDARG00000100588 525.76 3942.27 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
32. hspa8 ENSDARG00000068992, ENSDARG00000114726 509.33 3819.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
33. RPL29 ENSDARG00000077717 492.90 3695.88 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
34. cfl1l ENSDARG00000012972 468.25 3511.05 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
35. eef2b ENSDARG00000100371, ENSDARG00000109247 451.82 3387.85 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
36. hmgn2 ENSDARG00000099572 451.82 3387.85 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
37. mt-atp6 ENSDARG00000063911 435.39 3264.65 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
38. wu:fb17f05 wu:fb17f05 435.39 3264.65
39. hsp90ab1 ENSDARG00000029150 418.96 3141.46 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
40. id1 ENSDARG00000040764 410.75 3079.90 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
41. rps20 ENSDARG00000036044 410.75 3079.90 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
42. si:dkeyp-86f7.3 si:dkeyp-86f7.3 410.75 3079.90
43. h3f3a 402.53 3018.26 H3 histone, family 3A, transcript variant X1
44. btf3 ENSDARG00000035400, ENSDARG00000116462 394.32 2956.70 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rps9 ENSDARG00000011405, ENSDARG00000113248 394.32 2956.70 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
46. cirbp cirbp 386.10 2895.07
47. si:ch1073-429i10.3 386.10 2895.07 si:ch1073-429i10.3, transcript variant X2
48. rpl19 ENSDARG00000013307 377.89 2833.51 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
49. rps12 ENSDARG00000036875, ENSDARG00000115157 377.89 2833.51 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
50. rps14 ENSDARG00000036629 377.89 2833.51 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
51. rps2 ENSDARG00000077291 377.89 2833.51 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
52. rps4x ENSDARG00000014690 377.89 2833.51 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
53. faua ENSDARG00000099022 369.67 2771.87 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
54. rpl18 ENSDARG00000029533 369.67 2771.87 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
55. mt-nd1 ENSDARG00000063895 361.46 2710.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
56. pcna ENSDARG00000054155 353.24 2648.67 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
57. rplp1 ENSDARG00000021864 353.24 2648.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
58. rps7 ENSDARG00000042566 353.24 2648.67 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
59. eif5a ENSDARG00000017235 345.03 2587.11 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
60. krt18 ENSDARG00000018404, ENSDARG00000109528 345.03 2587.11 keratin 18 [Source:ZFIN;Acc:ZDB-GENE-030411-6]
61. rpl11 ENSDARG00000043509 345.03 2587.11 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
62. rps27.1 ENSDARG00000023298 345.03 2587.11 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
63. rps15 ENSDARG00000070849, ENSDARG00000110979 336.81 2525.48 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
64. zgc:92061 zgc:92061 336.81 2525.48
65. mt-co1 ENSDARG00000063905 328.60 2463.92 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
66. rpl28 ENSDARG00000005791 328.60 2463.92 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
67. rpl35a ENSDARG00000088030 328.60 2463.92 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
68. rplp0 ENSDARG00000051783 328.60 2463.92 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
69. rps15a ENSDARG00000010160 328.60 2463.92 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
70. rps19 ENSDARG00000030602 328.60 2463.92 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
71. rpl36a ENSDARG00000058105, ENSDARG00000112656 320.38 2402.28 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
72. rpl39 ENSDARG00000036316, ENSDARG00000117167 320.38 2402.28 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
73. rpl7 ENSDARG00000007320 320.38 2402.28 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
74. rps24 ENSDARG00000039347 320.38 2402.28 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
75. rps29 ENSDARG00000041232 320.38 2402.28 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
76. uba52 ENSDARG00000041435 320.38 2402.28 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
77. cyt1l ENSDARG00000036832 312.17 2340.72 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
78. rpl14 ENSDARG00000103433 312.17 2340.72 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
79. rps6 ENSDARG00000019778 312.17 2340.72 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
80. and1 ENSDARG00000088514 303.95 2279.09 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
81. rpl35 ENSDARG00000018334 295.74 2217.53 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
82. rps5 ENSDARG00000043453 287.52 2155.89 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. RPL37A RPL37A 279.31 2094.33
84. bcam ENSDARG00000090190 262.88 1971.13 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
85. rpl30 ENSDARG00000035871, ENSDARG00000109253 262.88 1971.13 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
86. rps3 ENSDARG00000103007 262.88 1971.13 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
87. krt8 ENSDARG00000058358, ENSDARG00000109279 254.66 1909.50 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
88. mt-cyb ENSDARG00000063924 254.66 1909.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
89. rpl6 ENSDARG00000058451 254.66 1909.50 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. rps13 ENSDARG00000036298, ENSDARG00000112818 254.66 1909.50 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
91. zgc:92533 zgc:92533 254.66 1909.50
92. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 246.45 1847.94 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
93. rplp2l ENSDARG00000011201 246.45 1847.94 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
94. zgc:56493 ENSDARG00000031435 238.23 1786.30 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
95. RPS17L RPS17L 230.02 1724.74
96. h1f0 ENSDARG00000038559 230.02 1724.74 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
97. rps10 ENSDARG00000034897 230.02 1724.74 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
98. rps16 ENSDARG00000045487 230.02 1724.74 ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-050506-107]
99. rps18 ENSDARG00000100392 230.02 1724.74 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
100. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 230.02 1724.74 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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