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Experiment Zebrafish_28hpf_whole2, section s69.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 5691.23 42667.36 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tmsb4x ENSDARG00000077777 3445.02 25827.44 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. AC024175.4 AC024175.4 1652.95 12392.23
4. mt-co2 ENSDARG00000063908 1468.84 11011.95 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. zgc:112425 zgc:112425 1129.25 8466.03
6. actb1 ENSDARG00000037746, ENSDARG00000113649 986.04 7392.38 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
7. actb2 ENSDARG00000037870 986.04 7392.38 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. hmga1a ENSDARG00000028335 986.04 7392.38 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. ppiaa ENSDARG00000009212 936.95 7024.35 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
10. eef1a1l1 ENSDARG00000020850 912.40 6840.30 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-nd2 ENSDARG00000063899 879.67 6594.92 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. mt-co3 ENSDARG00000063912 867.39 6502.85 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 781.47 5858.71 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. si:dkey-151g10.6 si:dkey-151g10.6 675.09 5061.17
15. mt-nd4 ENSDARG00000063917 630.09 4723.81 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. rpl26 ENSDARG00000102317 617.81 4631.74 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
17. col1a1a ENSDARG00000012405, ENSDARG00000116113 609.63 4570.42 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
18. rpl21 ENSDARG00000010516, ENSDARG00000110263 609.63 4570.42 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
19. rpl8 ENSDARG00000014867 601.45 4509.09 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
20. rps23 ENSDARG00000021838 585.08 4386.37 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
21. ptmab ENSDARG00000101766 572.81 4294.38 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
22. mt-atp6 ENSDARG00000063911 568.71 4263.64 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
23. rpl18a ENSDARG00000025073 564.62 4232.98 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
24. rps20 ENSDARG00000036044 548.26 4110.32 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
25. rps26l ENSDARG00000030408 540.07 4048.92 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
26. eef2b ENSDARG00000100371, ENSDARG00000109247 511.43 3834.21 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
27. rpl9 ENSDARG00000037350, ENSDARG00000112384 511.43 3834.21 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
28. hbae3 ENSDARG00000079305 507.34 3803.55 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
29. rpl27 ENSDARG00000015128 490.98 3680.89 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
30. rps27a ENSDARG00000032725, ENSDARG00000114059 478.70 3588.83 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
31. rpl23 ENSDARG00000053457 474.61 3558.17 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
32. mt-nd1 ENSDARG00000063895 462.34 3466.18 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. efemp2a ENSDARG00000094324 450.06 3374.12 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
34. hmgn2 ENSDARG00000099572 450.06 3374.12 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
35. rps15 ENSDARG00000070849, ENSDARG00000110979 441.88 3312.79 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
36. rpl19 ENSDARG00000013307 433.70 3251.46 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
37. rpl36 ENSDARG00000100588 429.60 3220.73 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 425.51 3190.06 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. mt-cyb ENSDARG00000063924 425.51 3190.06 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
40. rps12 ENSDARG00000036875, ENSDARG00000115157 417.33 3128.74 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
41. rps9 ENSDARG00000011405, ENSDARG00000113248 409.15 3067.41 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
42. hsp90ab1 ENSDARG00000029150 400.96 3006.01 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
43. si:dkeyp-86f7.3 si:dkeyp-86f7.3 400.96 3006.01
44. zgc:92533 zgc:92533 400.96 3006.01
45. rps29 ENSDARG00000041232 392.78 2944.69 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
46. hbbe3 ENSDARG00000038147, ENSDARG00000109344 388.69 2914.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
47. rpl36a ENSDARG00000058105, ENSDARG00000112656 388.69 2914.02 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
48. RPL29 ENSDARG00000077717 376.42 2822.03 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
49. rplp2l ENSDARG00000011201 368.23 2760.63 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
50. cfl1l ENSDARG00000012972 364.14 2729.97 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
51. rpl7 ENSDARG00000007320 364.14 2729.97 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
52. zgc:66286 zgc:66286 364.14 2729.97
53. cyt1l ENSDARG00000036832 360.05 2699.31 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
54. id1 ENSDARG00000040764 355.96 2668.64 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
55. rplp1 ENSDARG00000021864 355.96 2668.64 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. eif5a ENSDARG00000017235 351.87 2637.98 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
57. rps2 ENSDARG00000077291 351.87 2637.98 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
58. pcna ENSDARG00000054155 347.77 2607.24 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
59. rpl6 ENSDARG00000058451 343.68 2576.58 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
60. faua ENSDARG00000099022 339.59 2545.92 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
61. rpl15 ENSDARG00000009285 339.59 2545.92 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
62. rps15a ENSDARG00000010160 339.59 2545.92 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
63. rpl11 ENSDARG00000043509 335.50 2515.26 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
64. rps5 ENSDARG00000043453 331.41 2484.59 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
65. rps4x ENSDARG00000014690 327.32 2453.93 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
66. si:ch1073-429i10.3 327.32 2453.93 si:ch1073-429i10.3, transcript variant X2
67. uba52 ENSDARG00000041435 327.32 2453.93 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
68. mt-co1 ENSDARG00000063905 323.23 2423.27 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
69. rpl35 ENSDARG00000018334 323.23 2423.27 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
70. rps3 ENSDARG00000103007 323.23 2423.27 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
71. rps27.1 ENSDARG00000023298 319.13 2392.53 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
72. rpl18 ENSDARG00000029533 310.95 2331.20 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. cirbp cirbp 298.68 2239.21
74. h3f3a 298.68 2239.21 H3 histone, family 3A, transcript variant X1
75. rps19 ENSDARG00000030602 298.68 2239.21 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
76. RPL37A RPL37A 290.49 2177.81
77. rps14 ENSDARG00000036629 290.49 2177.81 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
78. btf3 ENSDARG00000035400, ENSDARG00000116462 286.40 2147.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
79. rpl5b ENSDARG00000015862, ENSDARG00000109661 278.22 2085.83 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
80. rps24 ENSDARG00000039347 278.22 2085.83 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
81. rplp0 ENSDARG00000051783 270.04 2024.50 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
82. myl10 ENSDARG00000062592 261.85 1963.10 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
83. rpl28 ENSDARG00000005791 257.76 1932.44 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
84. pfn1 ENSDARG00000088091 253.67 1901.77 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
85. rpl23a ENSDARG00000006316 249.58 1871.11 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
86. rpl39 ENSDARG00000036316, ENSDARG00000117167 249.58 1871.11 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
87. rps7 ENSDARG00000042566 249.58 1871.11 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
88. rps6 ENSDARG00000019778 245.49 1840.45 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
89. RPS17L RPS17L 241.40 1809.78
90. ppiab ENSDARG00000103994 233.21 1748.38 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
91. rps18 ENSDARG00000100392 229.12 1717.72 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
92. fth1a ENSDARG00000015551 225.03 1687.06 ferritin, heavy polypeptide 1a [Source:ZFIN;Acc:ZDB-GENE-000831-2]
93. hnrnpab hnrnpab 225.03 1687.06
94. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 225.03 1687.06 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
95. krt8 ENSDARG00000058358, ENSDARG00000109279 220.94 1656.40 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
96. rpl14 ENSDARG00000103433 220.94 1656.40 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
97. fabp3 ENSDARG00000023290 216.85 1625.73 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
98. smyhc1 ENSDARG00000099959, ENSDARG00000115916 216.85 1625.73 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
99. zgc:56493 ENSDARG00000031435 216.85 1625.73 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
100. apoc1l apoc1l 212.76 1595.07
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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