Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s63.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. krt4 ENSDARG00000017624, ENSDARG00000115790 5413.42 40577.56 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
2. tmsb4x ENSDARG00000077777 1889.47 14162.97 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
3. mt-co2 ENSDARG00000063908 1678.07 12578.37 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. mt-nd2 ENSDARG00000063899 1534.24 11500.26 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. AC024175.4 AC024175.4 1161.57 8706.82
6. eef1a1l1 ENSDARG00000020850 1063.51 7971.79 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
7. si:dkey-151g10.6 si:dkey-151g10.6 1030.82 7726.75
8. mt-co3 ENSDARG00000063912 1004.66 7530.67 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. actb1 ENSDARG00000037746, ENSDARG00000113649 995.95 7465.38 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
10. mt-atp6 ENSDARG00000063911 954.54 7154.98 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. actb2 ENSDARG00000037870 926.21 6942.62 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. mt-nd4 ENSDARG00000063917 915.31 6860.92 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. mt-nd1 ENSDARG00000063895 856.47 6419.87 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. ppiaa ENSDARG00000009212 795.45 5962.48 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
15. zgc:112425 zgc:112425 760.58 5701.11
16. tpma ENSDARG00000033683 736.61 5521.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 714.82 5358.10 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. rpl18a ENSDARG00000025073 679.95 5096.72 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
19. ckmb ENSDARG00000040565 671.23 5031.36 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
20. hmga1a ENSDARG00000028335 669.05 5015.02 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
21. rpl26 ENSDARG00000102317 653.79 4900.64 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
22. rpl23 ENSDARG00000053457 651.62 4884.37 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. rps23 ENSDARG00000021838 651.62 4884.37 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
24. rps27a ENSDARG00000032725, ENSDARG00000114059 640.72 4802.67 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
25. hspa8 ENSDARG00000068992, ENSDARG00000114726 634.18 4753.65 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
26. rpl8 ENSDARG00000014867 586.24 4394.30 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
27. myl10 ENSDARG00000062592 557.90 4181.87 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
28. zgc:92533 zgc:92533 555.73 4165.60
29. mt-cyb ENSDARG00000063924 547.01 4100.24 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 536.11 4018.54 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. rps26l ENSDARG00000030408 525.21 3936.83 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
32. rpl27 ENSDARG00000015128 488.17 3659.19 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
33. rpl9 ENSDARG00000037350, ENSDARG00000112384 448.94 3365.14 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
34. eef2b ENSDARG00000100371, ENSDARG00000109247 438.04 3283.43 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
35. rpl36 ENSDARG00000100588 438.04 3283.43 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
36. zgc:66286 zgc:66286 433.68 3250.75
37. col1a1a ENSDARG00000012405, ENSDARG00000116113 427.15 3201.80 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
38. rpl11 ENSDARG00000043509 424.97 3185.46 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
39. actc1b ENSDARG00000099197 422.79 3169.12 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
40. rps15 ENSDARG00000070849, ENSDARG00000110979 420.61 3152.78 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
41. rps20 ENSDARG00000036044 420.61 3152.78 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 414.07 3103.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. cyt1l ENSDARG00000036832 414.07 3103.76 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
44. rps12 ENSDARG00000036875, ENSDARG00000115157 411.89 3087.42 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
45. rplp1 ENSDARG00000021864 400.99 3005.71 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
46. rps9 ENSDARG00000011405, ENSDARG00000113248 400.99 3005.71 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
47. tnnc2 ENSDARG00000070835, ENSDARG00000111155 394.46 2956.77 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
48. RPL29 ENSDARG00000077717 392.28 2940.43 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
49. rps2 ENSDARG00000077291 383.56 2875.06 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
50. cfl1l ENSDARG00000012972 381.38 2858.72 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
51. rpl36a ENSDARG00000058105, ENSDARG00000112656 370.48 2777.02 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
52. fabp3 ENSDARG00000023290 368.30 2760.68 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
53. rplp2l ENSDARG00000011201 363.95 2728.07 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
54. rpl19 ENSDARG00000013307 353.05 2646.37 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
55. rpl35 ENSDARG00000018334 339.97 2548.33 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
56. rpl18 ENSDARG00000029533 335.61 2515.64 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
57. rps19 ENSDARG00000030602 335.61 2515.64 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
58. rps29 ENSDARG00000041232 331.26 2483.04 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
59. cirbp cirbp 329.08 2466.70
60. ptmab ENSDARG00000101766 326.90 2450.36 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
61. faua ENSDARG00000099022 324.72 2434.02 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
62. eif5a ENSDARG00000017235 322.54 2417.67 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
63. rpl6 ENSDARG00000058451 320.36 2401.33 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
64. rps5 ENSDARG00000043453 318.18 2384.99 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
65. rpl28 ENSDARG00000005791 305.10 2286.95 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
66. acta1a ENSDARG00000036371 300.75 2254.34 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
67. rps3 ENSDARG00000103007 298.57 2238.00 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
68. rpl15 ENSDARG00000009285 294.21 2205.32 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
69. rpsa ENSDARG00000019181 292.03 2188.98 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
70. hsp90ab1 ENSDARG00000029150 289.85 2172.64 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
71. ckma ENSDARG00000035327, ENSDARG00000114671 283.31 2123.62 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
72. rps15a ENSDARG00000010160 281.13 2107.28 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
73. si:dkeyp-86f7.3 si:dkeyp-86f7.3 281.13 2107.28
74. rpl7 ENSDARG00000007320 272.41 2041.91 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
75. tpm3 ENSDARG00000005162 270.24 2025.65 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
76. rplp0 ENSDARG00000051783 268.06 2009.31 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
77. rps6 ENSDARG00000019778 268.06 2009.31 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
78. rps7 ENSDARG00000042566 261.52 1960.28 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
79. hbae3 ENSDARG00000079305 259.34 1943.94 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
80. rps14 ENSDARG00000036629 257.16 1927.60 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
81. hbbe3 ENSDARG00000038147, ENSDARG00000109344 254.98 1911.26 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
82. rps18 ENSDARG00000100392 254.98 1911.26 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
83. rps4x ENSDARG00000014690 254.98 1911.26 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. efemp2a ENSDARG00000094324 250.62 1878.58 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
85. hsp90aa1.1 ENSDARG00000010478 250.62 1878.58 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
86. rpl14 ENSDARG00000103433 250.62 1878.58 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
87. id1 ENSDARG00000040764 248.44 1862.24 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
88. mt-co1 ENSDARG00000063905 248.44 1862.24 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
89. rpl39 ENSDARG00000036316, ENSDARG00000117167 248.44 1862.24 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
90. rpl23a ENSDARG00000006316 246.26 1845.90 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
91. rps27.1 ENSDARG00000023298 246.26 1845.90 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
92. col1a1b ENSDARG00000035809 244.08 1829.56 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 244.08 1829.56 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. uba52 ENSDARG00000041435 244.08 1829.56 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
95. RPL37A RPL37A 239.72 1796.88
96. aldoab ENSDARG00000034470 237.55 1780.61 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
97. hmgn2 ENSDARG00000099572 237.55 1780.61 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
98. smyhc1 ENSDARG00000099959, ENSDARG00000115916 235.37 1764.27 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
99. pfn1 ENSDARG00000088091 233.19 1747.93 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
100. rpl22 ENSDARG00000070437 224.47 1682.57 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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