Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s56.

Sample reads: 133,387. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5526.08 41429.65
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4101.53 30749.63 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 1975.33 14809.27 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1877.12 14072.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. ckmb ENSDARG00000040565 1713.10 12843.30 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co2 ENSDARG00000063908 1649.32 12365.14 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. tmsb4x ENSDARG00000077777 1478.21 11082.31 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-nd4 ENSDARG00000063917 1320.26 9898.14 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-atp6 ENSDARG00000063911 1229.14 9215.00 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. mt-co3 ENSDARG00000063912 1099.55 8243.45 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. ckma ENSDARG00000035327, ENSDARG00000114671 993.24 7446.43 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. actb2 ENSDARG00000037870 948.69 7112.44 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. actc1b ENSDARG00000099197 926.41 6945.40 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. mt-nd1 ENSDARG00000063895 913.25 6846.74 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. eef1a1l1 ENSDARG00000020850 912.24 6839.17 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. si:dkey-151g10.6 si:dkey-151g10.6 898.06 6732.86
17. atp2a1 ENSDARG00000020574 782.64 5867.54 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
18. ppiaa ENSDARG00000009212 761.38 5708.15 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. mylz3 ENSDARG00000017441 700.63 5252.70 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
20. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 678.36 5085.74 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
21. actb1 ENSDARG00000037746, ENSDARG00000113649 667.22 5002.22 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
22. mt-cyb ENSDARG00000063924 647.98 4857.98 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
23. eef2b ENSDARG00000100371, ENSDARG00000109247 607.48 4554.35 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. hmga1a ENSDARG00000028335 600.40 4501.27 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
25. zgc:66286 zgc:66286 559.90 4197.63
26. tnnc2 ENSDARG00000070835, ENSDARG00000111155 558.88 4189.99 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
27. zgc:112425 zgc:112425 541.67 4060.96
28. hspa8 ENSDARG00000068992, ENSDARG00000114726 526.49 3947.15 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
29. myhz1.3 ENSDARG00000067997 482.95 3620.73 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
30. rpl23 ENSDARG00000053457 479.91 3597.94 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. rpl10a ENSDARG00000042905, ENSDARG00000115649 478.90 3590.37 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
32. rpl18a ENSDARG00000025073 449.54 3370.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
33. myhz2 ENSDARG00000012944 440.43 3301.95 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
34. rpl8 ENSDARG00000014867 439.41 3294.31 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
35. btf3 ENSDARG00000035400, ENSDARG00000116462 432.33 3241.23 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
36. zgc:92533 zgc:92533 432.33 3241.23
37. acta1b ENSDARG00000055618 427.26 3203.22 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
38. rpl36a ENSDARG00000058105, ENSDARG00000112656 403.98 3028.68 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
39. acta1a ENSDARG00000036371 388.79 2914.80 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
40. fabp3 ENSDARG00000023290 387.78 2907.23 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
41. rps27a ENSDARG00000032725, ENSDARG00000114059 369.55 2770.56 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
42. rps23 ENSDARG00000021838 367.53 2755.41 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
43. myl10 ENSDARG00000062592 363.48 2725.05 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. rpl26 ENSDARG00000102317 353.35 2649.10 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
45. cyt1l ENSDARG00000036832 351.33 2633.96 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
46. rps14 ENSDARG00000036629 347.28 2603.60 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
47. aldoab ENSDARG00000034470 338.17 2535.30 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
48. rps26l ENSDARG00000030408 332.09 2489.72 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
49. eif5a ENSDARG00000017235 331.08 2482.14 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
50. myl1 ENSDARG00000014196 327.03 2451.78 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
51. tpm3 ENSDARG00000005162 327.03 2451.78 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
52. rplp1 ENSDARG00000021864 325.00 2436.56 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. rpl21 ENSDARG00000010516, ENSDARG00000110263 323.99 2428.99 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
54. hsp90aa1.1 ENSDARG00000010478 318.93 2391.05 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
55. hbae3 ENSDARG00000079305 301.72 2262.03 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
56. rps20 ENSDARG00000036044 301.72 2262.03 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
57. mt-co1 ENSDARG00000063905 298.68 2239.24 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
58. rpl36 ENSDARG00000100588 298.68 2239.24 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. tnni2b.1 ENSDARG00000035958 298.68 2239.24 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
60. rpl19 ENSDARG00000013307 297.67 2231.67 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
61. rpl9 ENSDARG00000037350, ENSDARG00000112384 295.64 2216.45 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
62. col1a1a ENSDARG00000012405, ENSDARG00000116113 294.63 2208.87 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
63. rps9 ENSDARG00000011405, ENSDARG00000113248 292.60 2193.66 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
64. rpl11 ENSDARG00000043509 286.53 2148.15 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
65. rpl6 ENSDARG00000058451 275.39 2064.63 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
66. rps15 ENSDARG00000070849, ENSDARG00000110979 273.37 2049.49 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. rps2 ENSDARG00000077291 272.36 2041.91 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
68. rpl27 ENSDARG00000015128 268.31 2011.55 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
69. zgc:113413 zgc:113413 263.24 1973.54
70. rpsa ENSDARG00000019181 261.22 1958.40 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
71. hbbe3 ENSDARG00000038147, ENSDARG00000109344 249.07 1867.31 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
72. tnnt3a ENSDARG00000030270 247.04 1852.09 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
73. RPL29 ENSDARG00000077717 246.03 1844.51 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
74. rpl18 ENSDARG00000029533 245.02 1836.94 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
75. rps12 ENSDARG00000036875, ENSDARG00000115157 242.99 1821.72 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
76. rps4x ENSDARG00000014690 242.99 1821.72 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
77. rpl7 ENSDARG00000007320 239.96 1799.01 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
78. smyhc1 ENSDARG00000099959, ENSDARG00000115916 238.94 1791.36 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
79. cfl1l ENSDARG00000012972 237.93 1783.79 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
80. fkbp1aa ENSDARG00000022684 237.93 1783.79 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
81. rps5 ENSDARG00000043453 235.91 1768.64 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
82. id1 ENSDARG00000040764 233.88 1753.42 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
83. ttna ttna 232.87 1745.85
84. rps15a ENSDARG00000010160 227.81 1707.92 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
85. ATP5B 220.72 1654.76 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
86. rps3 ENSDARG00000103007 217.68 1631.97 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
87. tnnt2c ENSDARG00000032242 217.68 1631.97 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
88. faua ENSDARG00000099022 215.66 1616.83 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
89. rpl15 ENSDARG00000009285 212.62 1594.04 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
90. rpl5b ENSDARG00000015862, ENSDARG00000109661 211.61 1586.46 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
91. rps19 ENSDARG00000030602 210.59 1578.82 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
92. rps6 ENSDARG00000019778 210.59 1578.82 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
93. cirbp cirbp 209.58 1571.24
94. rpl14 ENSDARG00000103433 208.57 1563.67 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
95. rbfox1l ENSDARG00000021184, ENSDARG00000111700 206.54 1548.45 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
96. rplp0 ENSDARG00000051783 206.54 1548.45 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. rps27.1 ENSDARG00000023298 203.51 1525.74 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
98. desma ENSDARG00000058656 202.49 1518.09 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
99. krt8 ENSDARG00000058358, ENSDARG00000109279 197.43 1480.15 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
100. rps29 ENSDARG00000041232 195.41 1465.01 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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