Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s53.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 4245.19 31824.41
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3969.49 29757.61 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2586.67 19391.18 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-co2 ENSDARG00000063908 2530.37 18969.13 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd2 ENSDARG00000063899 2116.10 15863.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. ckmb ENSDARG00000040565 1737.92 13028.46 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. tmsb4x ENSDARG00000077777 1737.92 13028.46 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-atp6 ENSDARG00000063911 1691.73 12682.19 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-co3 ENSDARG00000063912 1440.57 10799.35 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
10. mt-nd4 ENSDARG00000063917 1397.26 10474.67 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-nd1 ENSDARG00000063895 1127.34 8451.20 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
12. ckma ENSDARG00000035327, ENSDARG00000114671 1098.47 8234.77 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 861.74 6460.10 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
14. actc1b ENSDARG00000099197 853.08 6395.18 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. atp2a1 ENSDARG00000020574 845.86 6341.06 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. si:dkey-151g10.6 si:dkey-151g10.6 791.01 5929.87
17. actb2 ENSDARG00000037870 750.60 5626.93 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. eef1a1l1 ENSDARG00000020850 726.06 5442.97 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. ppiaa ENSDARG00000009212 698.63 5237.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
20. mt-cyb ENSDARG00000063924 688.53 5161.62 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. tnnc2 ENSDARG00000070835, ENSDARG00000111155 671.21 5031.78 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
22. myhz1.3 ENSDARG00000067997 665.43 4988.45 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
23. mylz3 ENSDARG00000017441 646.67 4847.81 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
24. rpl23 ENSDARG00000053457 555.73 4166.08 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
25. rps26l ENSDARG00000030408 505.21 3787.35 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
26. rpl10a ENSDARG00000042905, ENSDARG00000115649 496.55 3722.43 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
27. rpl8 ENSDARG00000014867 490.77 3679.10 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. eef2b ENSDARG00000100371, ENSDARG00000109247 470.57 3527.67 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
29. rpl18a ENSDARG00000025073 466.23 3495.13 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. rpl26 ENSDARG00000102317 453.24 3397.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
31. zgc:112425 zgc:112425 453.24 3397.75
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 448.91 3365.29 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. mt-co1 ENSDARG00000063905 446.03 3343.70 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
34. hmga1a ENSDARG00000028335 444.58 3332.83 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
35. actb1 ENSDARG00000037746, ENSDARG00000113649 425.82 3192.19 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
36. aldoab ENSDARG00000034470 418.60 3138.07 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 412.83 3094.81 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. rps27a ENSDARG00000032725, ENSDARG00000114059 412.83 3094.81 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
39. rps23 ENSDARG00000021838 411.38 3083.94 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
40. rpl36a ENSDARG00000058105, ENSDARG00000112656 401.28 3008.23 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
41. rps20 ENSDARG00000036044 375.30 2813.47 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
42. rpl27 ENSDARG00000015128 369.52 2770.14 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
43. acta1b ENSDARG00000055618 365.19 2737.68 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
44. rpl9 ENSDARG00000037350, ENSDARG00000112384 362.31 2716.09 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
45. myhz2 ENSDARG00000012944 360.86 2705.22 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
46. rpl19 ENSDARG00000013307 356.53 2672.76 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. rpl36 ENSDARG00000100588 353.65 2651.17 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
48. rps14 ENSDARG00000036629 337.77 2532.12 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
49. tnni2a.4 ENSDARG00000029069 336.32 2521.25 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
50. zgc:66286 zgc:66286 333.44 2499.66
51. myl1 ENSDARG00000014196 321.89 2413.07 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
52. btf3 ENSDARG00000035400, ENSDARG00000116462 317.56 2380.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
53. acta1a ENSDARG00000036371 314.67 2358.95 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. apoc1l apoc1l 313.23 2348.15
55. fabp3 ENSDARG00000023290 308.90 2315.69 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. myl10 ENSDARG00000062592 307.46 2304.90 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
57. rps29 ENSDARG00000041232 307.46 2304.90 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
58. rps5 ENSDARG00000043453 306.01 2294.03 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
59. tnni2b.1 ENSDARG00000035958 304.57 2283.23 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
60. rps15 ENSDARG00000070849, ENSDARG00000110979 300.24 2250.77 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
61. zgc:92533 zgc:92533 294.46 2207.44
62. eif5a ENSDARG00000017235 291.58 2185.85 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
63. tpm3 ENSDARG00000005162 287.25 2153.39 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
64. tnnt3a ENSDARG00000030270 278.59 2088.47 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
65. ttna ttna 272.81 2045.14
66. RPL29 ENSDARG00000077717 271.37 2034.35 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
67. rpl39 ENSDARG00000036316, ENSDARG00000117167 271.37 2034.35 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
68. rps15a ENSDARG00000010160 268.48 2012.68 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. rpl11 ENSDARG00000043509 267.04 2001.89 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
70. rps2 ENSDARG00000077291 267.04 2001.89 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
71. rplp1 ENSDARG00000021864 256.93 1926.10 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
72. rpl18 ENSDARG00000029533 255.49 1915.30 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
73. col1a1a ENSDARG00000012405, ENSDARG00000116113 252.60 1893.64 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
74. rps9 ENSDARG00000011405, ENSDARG00000113248 252.60 1893.64 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
75. rpl6 ENSDARG00000058451 251.16 1882.84 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
76. rplp2l ENSDARG00000011201 251.16 1882.84 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
77. apoa1b ENSDARG00000101324 249.72 1872.05 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
78. hsp90aa1.1 ENSDARG00000010478 249.72 1872.05 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
79. ATP5B 245.39 1839.59 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
80. rpl17 ENSDARG00000057556 245.39 1839.59 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
81. rps6 ENSDARG00000019778 242.50 1817.92 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
82. icn ENSDARG00000009978 239.61 1796.26 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
83. zgc:161979 zgc:161979 239.61 1796.26
84. rpl14 ENSDARG00000103433 235.28 1763.80 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
85. faua ENSDARG00000099022 229.51 1720.54 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
86. ptmab ENSDARG00000101766 229.51 1720.54 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
87. rps12 ENSDARG00000036875, ENSDARG00000115157 228.07 1709.75 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
88. si:ch211-226o13.2 228.07 1709.75 si:ch211-226o13.2
89. smyhc1 ENSDARG00000099959, ENSDARG00000115916 223.74 1677.29 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
90. rps27.1 ENSDARG00000023298 222.29 1666.42 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. rps3 ENSDARG00000103007 222.29 1666.42 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. apoa2 ENSDARG00000015866 220.85 1655.62 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
93. atp5g3b 216.52 1623.16 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
94. rps24 ENSDARG00000039347 216.52 1623.16 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
95. col1a1b ENSDARG00000035809 210.74 1579.83 collagen, type I, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4400]
96. cyt1l ENSDARG00000036832 206.41 1547.37 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
97. rpl28 ENSDARG00000005791 206.41 1547.37 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
98. rps4x ENSDARG00000014690 206.41 1547.37 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. rpl35 ENSDARG00000018334 204.97 1536.57 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
100. mt-nd3 ENSDARG00000063914 202.08 1514.91 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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