Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s35.

Sample reads: 133,402. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 6193.56 46428.03
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3404.15 25518.11 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2792.18 20930.68 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2117.44 15872.71 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. ckma ENSDARG00000035327, ENSDARG00000114671 1708.54 12807.52 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
6. mt-nd2 ENSDARG00000063899 1672.54 12537.66 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-co2 ENSDARG00000063908 1477.78 11077.70 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. tmsb4x ENSDARG00000077777 1458.39 10932.35 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. mt-nd4 ENSDARG00000063917 1371.63 10281.98 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. atp2a1 ENSDARG00000020574 1360.55 10198.92 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. actc1b ENSDARG00000099197 1211.02 9078.02 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. mt-atp6 ENSDARG00000063911 1171.33 8780.50 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mylz3 ENSDARG00000017441 1096.56 8220.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1069.80 8019.41 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
15. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 983.03 7368.97 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
16. mt-co3 ENSDARG00000063912 971.95 7285.91 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. actb2 ENSDARG00000037870 895.34 6711.63 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. mt-nd1 ENSDARG00000063895 799.35 5992.07 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
19. eef1a1l1 ENSDARG00000020850 756.89 5673.78 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
20. mt-cyb ENSDARG00000063924 734.73 5507.67 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. tnnc2 ENSDARG00000070835, ENSDARG00000111155 705.20 5286.30 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
22. acta1b ENSDARG00000055618 675.66 5064.87 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
23. apoa1b ENSDARG00000101324 666.43 4995.68 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. myhz1.3 ENSDARG00000067997 634.12 4753.48 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. actb1 ENSDARG00000037746, ENSDARG00000113649 619.36 4642.83 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
26. si:dkey-151g10.6 si:dkey-151g10.6 560.28 4199.96
27. zgc:112425 zgc:112425 551.97 4137.67
28. ppiaa ENSDARG00000009212 551.05 4130.77 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. apoc1l apoc1l 526.13 3943.96
30. hmga1a ENSDARG00000028335 523.36 3923.20 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. apobb apobb 515.98 3867.88
32. eef2b ENSDARG00000100371, ENSDARG00000109247 499.36 3743.29 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
33. zgc:161979 zgc:161979 486.44 3646.44
34. pvalb1 ENSDARG00000037789 485.52 3639.54 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
35. aldoab ENSDARG00000034470 431.98 3238.20 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
36. si:ch211-226o13.2 431.06 3231.30 si:ch211-226o13.2
37. zgc:161979_1 zgc:161979_1 415.37 3113.69
38. tnni2a.4 ENSDARG00000029069 411.67 3085.95 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
39. rpl18a ENSDARG00000025073 400.60 3002.97 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 396.90 2975.23 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. apoa2 ENSDARG00000015866 389.52 2919.91 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
42. rpl10a ENSDARG00000042905, ENSDARG00000115649 383.06 2871.49 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
43. mt-co1 ENSDARG00000063905 375.67 2816.09 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
44. myl1 ENSDARG00000014196 375.67 2816.09 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
45. rpl23 ENSDARG00000053457 372.91 2795.40 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. apoeb ENSDARG00000040295 364.60 2733.11 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 362.75 2719.24 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. tnnt3a ENSDARG00000030270 357.21 2677.71 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
49. rps27a ENSDARG00000032725, ENSDARG00000114059 355.37 2663.92 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
50. rpl8 ENSDARG00000014867 341.52 2560.09 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
51. tnnt3b ENSDARG00000068457 329.52 2470.14 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
52. acta1a ENSDARG00000036371 327.68 2456.35 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
53. rpl26 ENSDARG00000102317 326.75 2449.38 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
54. eif5a ENSDARG00000017235 314.75 2359.42 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
55. rps23 ENSDARG00000021838 309.22 2317.97 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rps26l ENSDARG00000030408 305.52 2290.23 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
57. ttna ttna 299.06 2241.81
58. zgc:66286 zgc:66286 296.29 2221.04
59. tpm3 ENSDARG00000005162 289.83 2172.62 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 273.22 2048.11 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. zgc:92533 zgc:92533 268.60 2013.47
62. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 265.83 1992.71 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
63. cyt1l ENSDARG00000036832 263.06 1971.94 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
64. tnni2b.1 ENSDARG00000035958 260.30 1951.26 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
65. mylpfb ENSDARG00000002589 258.45 1937.39 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
66. rps20 ENSDARG00000036044 254.76 1909.73 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
67. myl10 ENSDARG00000062592 249.22 1868.20 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
68. rps14 ENSDARG00000036629 244.60 1833.57 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
69. fabp3 ENSDARG00000023290 243.68 1826.67 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
70. rps15 ENSDARG00000070849, ENSDARG00000110979 240.91 1805.90 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
71. rpl11 ENSDARG00000043509 234.45 1757.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
72. rpl21 ENSDARG00000010516, ENSDARG00000110263 234.45 1757.48 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
73. zgc:113413 zgc:113413 234.45 1757.48
74. rpl27 ENSDARG00000015128 233.53 1750.58 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
75. ptmab ENSDARG00000101766 232.60 1743.61 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
76. rpl19 ENSDARG00000013307 228.91 1715.95 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
77. rpl6 ENSDARG00000058451 227.99 1709.05 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
78. rpl9 ENSDARG00000037350, ENSDARG00000112384 218.76 1639.86 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
79. rps2 ENSDARG00000077291 215.07 1612.20 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. rpsa ENSDARG00000019181 210.45 1577.57 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
81. rps19 ENSDARG00000030602 201.22 1508.38 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
82. rps9 ENSDARG00000011405, ENSDARG00000113248 201.22 1508.38 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
83. rps3 ENSDARG00000103007 200.30 1501.48 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
84. RPL29 ENSDARG00000077717 197.53 1480.72 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
85. col1a1a ENSDARG00000012405, ENSDARG00000116113 193.84 1453.06 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
86. zgc:153129 zgc:153129 193.84 1453.06
87. rpl5b ENSDARG00000015862, ENSDARG00000109661 191.99 1439.19 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
88. rbfox1l ENSDARG00000021184, ENSDARG00000111700 191.07 1432.29 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
89. rplp1 ENSDARG00000021864 190.14 1425.32 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
90. rps15a ENSDARG00000010160 189.22 1418.43 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
91. pabpc1a ENSDARG00000017219 183.68 1376.90 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
92. rpl7 ENSDARG00000007320 179.99 1349.24 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
93. cfl1l ENSDARG00000012972 179.07 1342.34 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
94. rps12 ENSDARG00000036875, ENSDARG00000115157 179.07 1342.34 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
95. rbp4 ENSDARG00000101199 178.15 1335.44 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
96. rpl18 ENSDARG00000029533 176.30 1321.58 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
97. cirbp cirbp 172.61 1293.92
98. ttnb ttnb 172.61 1293.92
99. atp5g1 171.68 1286.94 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
100. rpl35 ENSDARG00000018334 169.84 1273.15 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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