Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s3.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 9006.07 67510.48
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2251.52 16877.64 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 2251.52 16877.64 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. zgc:112425 zgc:112425 2251.52 16877.64
5. apoa1b ENSDARG00000101324 1688.64 12658.23 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
6. cirbp cirbp 1688.64 12658.23
7. hsp90ab1 ENSDARG00000029150 1688.64 12658.23 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
8. mt-nd3 ENSDARG00000063914 1688.64 12658.23 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
9. mt-nd4 ENSDARG00000063917 1688.64 12658.23 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. rps27a ENSDARG00000032725, ENSDARG00000114059 1688.64 12658.23 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
11. BX511252.1 BX511252.1 1125.76 8438.82
12. RPS17L RPS17L 1125.76 8438.82
13. actb1 ENSDARG00000037746, ENSDARG00000113649 1125.76 8438.82 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
14. apoc2 ENSDARG00000092155 1125.76 8438.82 apolipoprotein C-II [Source:ZFIN;Acc:ZDB-GENE-030131-2168]
15. atp1b3a ENSDARG00000015790 1125.76 8438.82 ATPase Na+/K+ transporting subunit beta 3a [Source:ZFIN;Acc:ZDB-GENE-990415-167]
16. ccdc22 ENSDARG00000052379 1125.76 8438.82 coiled-coil domain containing 22 [Source:ZFIN;Acc:ZDB-GENE-050913-93]
17. cox6c ENSDARG00000038577 1125.76 8438.82 cytochrome c oxidase subunit 6C [Source:ZFIN;Acc:ZDB-GENE-040724-95]
18. creb1a ENSDARG00000053586 1125.76 8438.82 cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
19. eif1axb ENSDARG00000057912, ENSDARG00000111310 1125.76 8438.82 eukaryotic translation initiation factor 1A X-linked b [Source:ZFIN;Acc:ZDB-GENE-030131-1319]
20. faua ENSDARG00000099022 1125.76 8438.82 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
21. krt5 ENSDARG00000058371, ENSDARG00000112017 1125.76 8438.82 keratin 5 [Source:ZFIN;Acc:ZDB-GENE-991110-23]
22. mt-co2 ENSDARG00000063908 1125.76 8438.82 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
23. mt-cyb ENSDARG00000063924 1125.76 8438.82 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. piezo1 ENSDARG00000076870 1125.76 8438.82 piezo-type mechanosensitive ion channel component 1 [Source:ZFIN;Acc:ZDB-GENE-041111-255]
25. prss35 ENSDARG00000100691, ENSDARG00000109353 1125.76 8438.82 protease, serine, 35 [Source:ZFIN;Acc:ZDB-GENE-040704-55]
26. rpl10a ENSDARG00000042905, ENSDARG00000115649 1125.76 8438.82 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
27. rpl21 ENSDARG00000010516, ENSDARG00000110263 1125.76 8438.82 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
28. rpl39 ENSDARG00000036316, ENSDARG00000117167 1125.76 8438.82 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
29. rpl8 ENSDARG00000014867 1125.76 8438.82 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. smarca5 ENSDARG00000052348 1125.76 8438.82 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [Source:ZFIN;Acc:ZDB-GENE-021125-1]
31. stmn1a ENSDARG00000004169 1125.76 8438.82 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
32. tpma ENSDARG00000033683 1125.76 8438.82 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
33. ttna ttna 1125.76 8438.82
34. zeb2a ENSDARG00000062338, ENSDARG00000111349, ENSDARG00000115964 1125.76 8438.82 zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
35. ARFGAP1 ENSDARG00000101616 562.88 4219.41 ADP-ribosylation factor GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-041114-130]
36. C13H9orf72 C13H9orf72 562.88 4219.41
37. CABZ01111496.1 ENSDARG00000003041 562.88 4219.41 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
38. COL22A1 COL22A1 562.88 4219.41
39. LYAR ENSDARG00000098507 562.88 4219.41 Ly1 antibody reactive homolog (mouse) [Source:ZFIN;Acc:ZDB-GENE-040426-1414]
40. RAPGEF2 ENSDARG00000005482 562.88 4219.41 Rap guanine nucleotide exchange factor (GEF) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6959]
41. SH3BGRL ENSDARG00000058302 562.88 4219.41 SH3 domain binding glutamate-rich protein like [Source:ZFIN;Acc:ZDB-GENE-040426-1376]
42. ZNF628 562.88 4219.41 zinc finger protein 628, transcript variant X3
43. abcc2 ENSDARG00000014031, ENSDARG00000116140 562.88 4219.41 ATP-binding cassette, sub-family C (CFTR/MRP), member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1523]
44. angptl4 ENSDARG00000035859 562.88 4219.41 angiopoietin-like 4 [Source:ZFIN;Acc:ZDB-GENE-041111-222]
45. anp32a ENSDARG00000006487 562.88 4219.41 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
46. apoa1a ENSDARG00000012076, ENSDARG00000110395 562.88 4219.41 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
47. apoa2 ENSDARG00000015866 562.88 4219.41 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
48. apoc1l apoc1l 562.88 4219.41
49. arhgdig ENSDARG00000004034 562.88 4219.41 Rho GDP dissociation inhibitor (GDI) gamma [Source:ZFIN;Acc:ZDB-GENE-040426-1493]
50. atat1 ENSDARG00000004472 562.88 4219.41 alpha tubulin acetyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2120]
51. atp5l ENSDARG00000011841 562.88 4219.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g [Source:ZFIN;Acc:ZDB-GENE-030131-5177]
52. azin1b ENSDARG00000035869, ENSDARG00000115647 562.88 4219.41 antizyme inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-030121-1]
53. bnip4 ENSDARG00000022832, ENSDARG00000117207 562.88 4219.41 BCL2 interacting protein 4 [Source:ZFIN;Acc:ZDB-GENE-051113-212]
54. capn2b ENSDARG00000055592 562.88 4219.41 calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
55. cbx3b ENSDARG00000092158 562.88 4219.41 chromobox homolog 3b [Source:ZFIN;Acc:ZDB-GENE-070628-2]
56. ccnd1 ENSDARG00000101637 562.88 4219.41 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
57. cers2b ENSDARG00000058992 562.88 4219.41 ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
58. chaf1a ENSDARG00000062152, ENSDARG00000114749 562.88 4219.41 chromatin assembly factor 1, subunit A (p150) [Source:ZFIN;Acc:ZDB-GENE-030131-5366]
59. col9a2 ENSDARG00000024492 562.88 4219.41 procollagen, type IX, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9786]
60. cpt2 ENSDARG00000038618, ENSDARG00000112216 562.88 4219.41 carnitine palmitoyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6719]
61. cstf3 ENSDARG00000018904 562.88 4219.41 cleavage stimulation factor, 3' pre-RNA, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1997]
62. cyb5a ENSDARG00000098589 562.88 4219.41 cytochrome b5 type A (microsomal) [Source:ZFIN;Acc:ZDB-GENE-040426-2148]
63. dla ENSDARG00000010791 562.88 4219.41 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
64. eef1a1l1 ENSDARG00000020850 562.88 4219.41 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
65. eif3ha ENSDARG00000102452 562.88 4219.41 eukaryotic translation initiation factor 3, subunit H, a [Source:ZFIN;Acc:ZDB-GENE-040808-19]
66. eif4ba ENSDARG00000017439, ENSDARG00000117080 562.88 4219.41 eukaryotic translation initiation factor 4Ba [Source:ZFIN;Acc:ZDB-GENE-060629-1]
67. eif4e1c ENSDARG00000012274, ENSDARG00000116158 562.88 4219.41 eukaryotic translation initiation factor 4E family member 1c [Source:ZFIN;Acc:ZDB-GENE-050417-398]
68. elavl1 562.88 4219.41 ELAV like RNA binding protein 1, transcript variant X3
69. elmod2 ENSDARG00000101669 562.88 4219.41 ELMO/CED-12 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060824-2]
70. emc6 ENSDARG00000035282 562.88 4219.41 ER membrane protein complex subunit 6 [Source:ZFIN;Acc:ZDB-GENE-030131-9164]
71. eppk1 ENSDARG00000096359 562.88 4219.41 epiplakin 1 [Source:ZFIN;Acc:ZDB-GENE-030416-1]
72. erh ENSDARG00000032866 562.88 4219.41 enhancer of rudimentary homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-990415-57]
73. exosc8 ENSDARG00000068755 562.88 4219.41 exosome component 8 [Source:ZFIN;Acc:ZDB-GENE-030131-1736]
74. fkbp9 ENSDARG00000005023 562.88 4219.41 FK506 binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-040801-23]
75. gas1a ENSDARG00000077298 562.88 4219.41 growth arrest-specific 1a [Source:ZFIN;Acc:ZDB-GENE-050302-155]
76. gdi1 ENSDARG00000056122 562.88 4219.41 GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
77. glud1a ENSDARG00000008816, ENSDARG00000114252 562.88 4219.41 glutamate dehydrogenase 1a [Source:ZFIN;Acc:ZDB-GENE-030114-2]
78. gpx4b ENSDARG00000076836 562.88 4219.41 glutathione peroxidase 4b [Source:ZFIN;Acc:ZDB-GENE-030410-3]
79. greb1 ENSDARG00000070794 562.88 4219.41 growth regulating estrogen receptor binding 1 [Source:ZFIN;Acc:ZDB-GENE-070112-332]
80. h1f0 ENSDARG00000038559 562.88 4219.41 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
81. h2afvb ENSDARG00000116491 562.88 4219.41 H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
82. h3f3a 562.88 4219.41 H3 histone, family 3A, transcript variant X1
83. hadhb ENSDARG00000102055 562.88 4219.41 hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta [Source:ZFIN;Acc:ZDB-GENE-030131-8550]
84. he1a 562.88 4219.41 hatching enzyme 1a, transcript variant X1
85. hexb ENSDARG00000034368 562.88 4219.41 hexosaminidase B (beta polypeptide) [Source:ZFIN;Acc:ZDB-GENE-030131-2333]
86. hif1al ENSDARG00000100826 562.88 4219.41 hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
87. hmgb2b ENSDARG00000053990 562.88 4219.41 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
88. hmgn2 ENSDARG00000099572 562.88 4219.41 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
89. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 562.88 4219.41 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
90. hnrnpul1 ENSDARG00000040564 562.88 4219.41 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
91. hnrpdl 562.88 4219.41 heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
92. hp1bp3 ENSDARG00000044669 562.88 4219.41 heterochromatin protein 1, binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060810-79]
93. hspa8 ENSDARG00000068992, ENSDARG00000114726 562.88 4219.41 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
94. icn ENSDARG00000009978 562.88 4219.41 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
95. ip6k2 ip6k2 562.88 4219.41
96. kdsr ENSDARG00000012021 562.88 4219.41 3-ketodihydrosphingosine reductase [Source:ZFIN;Acc:ZDB-GENE-040426-853]
97. krt8 ENSDARG00000058358, ENSDARG00000109279 562.88 4219.41 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
98. lig3 ENSDARG00000052553 562.88 4219.41 ligase III, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-030131-8453]
99. llgl2 ENSDARG00000023920 562.88 4219.41 lethal giant larvae homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-9877]
100. lmnb1 ENSDARG00000044299 562.88 4219.41 lamin B1 [Source:ZFIN;Acc:ZDB-GENE-020424-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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