Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s18.

Sample reads: 133,391. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 12653.46 94860.48
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1741.69 13057.10 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1611.02 12077.50 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. zgc:112425 zgc:112425 1526.13 11441.09
5. mt-co2 ENSDARG00000063908 1486.62 11144.90 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. hmga1a ENSDARG00000028335 1184.21 8877.79 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
7. mt-nd2 ENSDARG00000063899 1006.99 7549.20 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. mt-atp6 ENSDARG00000063911 918.18 6883.41 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-nd4 ENSDARG00000063917 847.37 6352.56 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. actb2 ENSDARG00000037870 827.03 6200.08 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. ppiaa ENSDARG00000009212 743.31 5572.45 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. he1a 733.14 5496.21 hatching enzyme 1a, transcript variant X1
13. eef1a1l1 ENSDARG00000020850 730.40 5475.66 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. si:dkey-151g10.6 si:dkey-151g10.6 723.36 5422.89
15. ptmab ENSDARG00000101766 715.53 5364.19 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. mt-co3 ENSDARG00000063912 708.49 5311.41 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. AL954137.2 ENSDARG00000114408 572.35 4290.79
18. eef2b ENSDARG00000100371, ENSDARG00000109247 538.70 4038.53 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. mt-nd1 ENSDARG00000063895 538.70 4038.53 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 501.15 3757.02 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. pcna ENSDARG00000054155 498.80 3739.40 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
22. actb1 ENSDARG00000037746, ENSDARG00000113649 492.15 3689.55 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
23. rpl10a ENSDARG00000042905, ENSDARG00000115649 451.07 3381.58 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
24. rpl23 ENSDARG00000053457 445.20 3337.58 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
25. rpl18a ENSDARG00000025073 440.51 3302.42 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. mt-cyb ENSDARG00000063924 438.16 3284.80 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. hsp90ab1 ENSDARG00000029150 401.00 3006.22 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
28. rpl8 ENSDARG00000014867 394.74 2959.29 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. rps27a ENSDARG00000032725, ENSDARG00000114059 394.34 2956.29 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
30. apoa1b ENSDARG00000101324 390.43 2926.98 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
31. cirbp cirbp 376.74 2824.34
32. rps23 ENSDARG00000021838 376.35 2821.42 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
33. eif5a ENSDARG00000017235 372.83 2795.03 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
34. rplp1 ENSDARG00000021864 370.87 2780.34 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
35. id1 ENSDARG00000040764 363.83 2727.56 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
36. rps26l ENSDARG00000030408 347.40 2604.39 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
37. zgc:174855 ENSDARG00000094559 346.62 2598.54 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
38. ctslb ENSDARG00000039173, ENSDARG00000074306 339.57 2545.69 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
39. zgc:161979_1 zgc:161979_1 332.92 2495.84
40. rpl21 ENSDARG00000010516, ENSDARG00000110263 314.93 2360.97 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
41. pabpc1a ENSDARG00000017219 312.58 2343.35 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 311.02 2331.66 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. rpl26 ENSDARG00000102317 310.23 2325.73 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. rpl36a ENSDARG00000058105, ENSDARG00000112656 310.23 2325.73 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
45. hmgn2 ENSDARG00000099572 306.32 2296.42 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
46. rps20 ENSDARG00000036044 297.71 2231.87 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
47. zgc:161979 zgc:161979 296.15 2220.18
48. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 290.28 2176.17 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
49. hnrnpab hnrnpab 282.07 2114.62
50. apobb apobb 280.89 2105.78
51. fabp3 ENSDARG00000023290 280.89 2105.78 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
52. zgc:123194 zgc:123194 279.72 2097.01
53. si:dkey-269i1.3 278.55 2088.23 si:dkey-269i1.3
54. rps15 ENSDARG00000070849, ENSDARG00000110979 272.29 2041.30 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
55. rpl9 ENSDARG00000037350, ENSDARG00000112384 270.33 2026.61 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
56. h3f3a 267.20 2003.15 H3 histone, family 3A, transcript variant X1
57. cfl1 ENSDARG00000021124 262.90 1970.91 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
58. rpl36 ENSDARG00000100588 260.55 1953.29 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. ran ENSDARG00000057026 260.16 1950.37 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
60. si:dkeyp-86f7.3 si:dkeyp-86f7.3 257.03 1926.90
61. rps29 ENSDARG00000041232 253.90 1903.44 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
62. apoa2 ENSDARG00000015866 251.16 1882.90 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
63. rps14 ENSDARG00000036629 249.20 1868.20 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
64. rps9 ENSDARG00000011405, ENSDARG00000113248 241.38 1809.58 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
65. rpl11 ENSDARG00000043509 233.16 1747.95 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. rpl19 ENSDARG00000013307 230.82 1730.41 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. apoc1l apoc1l 229.25 1718.64
68. faua ENSDARG00000099022 229.25 1718.64 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
69. rps12 ENSDARG00000036875, ENSDARG00000115157 224.56 1683.48 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
70. rpl27 ENSDARG00000015128 223.38 1674.64 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. rps5 ENSDARG00000043453 222.21 1665.86 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
72. fkbp1aa ENSDARG00000022684 221.43 1660.02 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
73. si:ch1073-429i10.3 221.04 1657.09 si:ch1073-429i10.3, transcript variant X2
74. rpl18 ENSDARG00000029533 220.25 1651.17 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
75. rps2 ENSDARG00000077291 220.25 1651.17 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. rps27.1 ENSDARG00000023298 219.08 1642.40 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
77. khdrbs1a ENSDARG00000052856 217.52 1630.70 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
78. mt-co1 ENSDARG00000063905 214.78 1610.16 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
79. hbbe3 ENSDARG00000038147, ENSDARG00000109344 213.99 1604.24 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
80. hbae3 ENSDARG00000079305 212.43 1592.55 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
81. rplp2l ENSDARG00000011201 212.04 1589.62 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
82. rpsa ENSDARG00000019181 211.65 1586.70 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. rps3 ENSDARG00000103007 211.26 1583.77 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
84. rpl6 ENSDARG00000058451 210.86 1580.78 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
85. rps6 ENSDARG00000019778 210.47 1577.85 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
86. tuba8l4 ENSDARG00000006260 210.08 1574.93 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
87. RPL29 ENSDARG00000077717 205.00 1536.84 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
88. hnrnpa0a ENSDARG00000089302 203.82 1528.00 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
89. zgc:92533 zgc:92533 190.91 1431.21
90. rpl39 ENSDARG00000036316, ENSDARG00000117167 190.52 1428.29 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
91. rps15a ENSDARG00000010160 187.00 1401.90 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. pnrc2 ENSDARG00000053291, ENSDARG00000112537 185.83 1393.13 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
93. rpl28 ENSDARG00000005791 185.04 1387.21 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
94. marcksb ENSDARG00000008803 183.48 1375.51 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
95. h3f3d ENSDARG00000045248 181.92 1363.82 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
96. top1l ENSDARG00000070545 181.52 1360.82 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
97. eif5a2 ENSDARG00000056186 180.35 1352.05 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
98. he1b 179.18 1343.28 hatching enzyme 1b
99. wu:fa26c03 179.18 1343.28 wu:fa26c03
100. rplp0 ENSDARG00000051783 174.48 1308.04 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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