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Experiment Zebrafish_28hpf_whole2, section s14.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 4725.19 35418.55
2. zgc:112425 zgc:112425 2072.16 15532.27
3. mt-co2 ENSDARG00000063908 1652.75 12388.50 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. hmga1a ENSDARG00000028335 1409.41 10564.50 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. tmsb4x ENSDARG00000077777 1256.38 9417.43 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. krt4 ENSDARG00000017624, ENSDARG00000115790 1228.35 9207.33 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
7. mt-nd2 ENSDARG00000063899 1139.30 8539.84 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. ppiaa ENSDARG00000009212 1047.60 7852.48 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. ptmab ENSDARG00000101766 1023.32 7670.49 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
10. mt-nd4 ENSDARG00000063917 1005.72 7538.56 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. mt-atp6 ENSDARG00000063911 945.94 7090.47 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-co3 ENSDARG00000063912 899.86 6745.07 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. actb2 ENSDARG00000037870 857.04 6424.10 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. eef1a1l1 ENSDARG00000020850 852.53 6390.30 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. si:dkey-151g10.6 si:dkey-151g10.6 764.57 5730.98
16. pcna ENSDARG00000054155 643.29 4821.90 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
17. mt-nd1 ENSDARG00000063895 638.15 4783.37 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 631.92 4736.68 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 616.04 4617.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. AL954137.2 ENSDARG00000114408 594.56 4456.64
21. mt-cyb ENSDARG00000063924 499.44 3743.65 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 493.37 3698.15 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. rpl8 ENSDARG00000014867 460.36 3450.72 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. hsp90ab1 ENSDARG00000029150 456.00 3418.03 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
25. id1 ENSDARG00000040764 454.91 3409.86 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
26. rpl18a ENSDARG00000025073 451.33 3383.03 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
27. actb1 ENSDARG00000037746, ENSDARG00000113649 451.02 3380.71 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
28. zgc:123194 zgc:123194 446.35 3345.70
29. cirbp cirbp 442.92 3319.99
30. rps27a ENSDARG00000032725, ENSDARG00000114059 442.30 3315.34 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
31. rps23 ENSDARG00000021838 436.70 3273.37 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
32. hmgn2 ENSDARG00000099572 431.09 3231.32 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
33. rplp1 ENSDARG00000021864 413.50 3099.47 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
34. hnrnpab hnrnpab 393.10 2946.56
35. rpl21 ENSDARG00000010516, ENSDARG00000110263 392.79 2944.23 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
36. h3f3a 388.43 2911.55 H3 histone, family 3A, transcript variant X1
37. cfl1 ENSDARG00000021124 387.50 2904.58 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
38. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 386.25 2895.21 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
39. rpl26 ENSDARG00000102317 375.04 2811.18 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. rps26l ENSDARG00000030408 363.37 2723.71 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
41. rpl36a ENSDARG00000058105, ENSDARG00000112656 357.61 2680.53 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 352.63 2643.20 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. pabpc1a ENSDARG00000017219 342.82 2569.67 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
44. ran ENSDARG00000057026 341.73 2561.50 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
45. eif5a ENSDARG00000017235 338.93 2540.51 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
46. marcksb ENSDARG00000008803 326.00 2443.59 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
47. si:dkeyp-86f7.3 si:dkeyp-86f7.3 322.27 2415.64
48. khdrbs1a ENSDARG00000052856 320.24 2400.42 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
49. rpl9 ENSDARG00000037350, ENSDARG00000112384 315.42 2364.29 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
50. rps20 ENSDARG00000036044 308.88 2315.27 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
51. rpsa ENSDARG00000019181 292.06 2189.19 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
52. h3f3d ENSDARG00000045248 288.48 2162.36 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
53. rpl19 ENSDARG00000013307 288.48 2162.36 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
54. rpl6 ENSDARG00000058451 288.02 2158.91 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
55. rps14 ENSDARG00000036629 287.55 2155.39 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
56. rps2 ENSDARG00000077291 283.66 2126.23 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. rpl11 ENSDARG00000043509 281.32 2108.69 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. rpl36 ENSDARG00000100588 277.43 2079.53 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. hnrnpa0a ENSDARG00000089302 275.09 2061.99 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
60. si:ch1073-429i10.3 273.54 2050.37 si:ch1073-429i10.3, transcript variant X2
61. eif5a2 ENSDARG00000056186 272.29 2041.00 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
62. fabp3 ENSDARG00000023290 269.02 2016.49 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
63. rpl27 ENSDARG00000015128 268.56 2013.04 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
64. rpl23 ENSDARG00000053457 264.35 1981.49 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
65. fkbp1aa ENSDARG00000022684 264.20 1980.36 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
66. rps15 ENSDARG00000070849, ENSDARG00000110979 263.89 1978.04 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. mt-co1 ENSDARG00000063905 260.46 1952.33 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
68. tuba8l4 ENSDARG00000006260 260.30 1951.13 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
69. rps9 ENSDARG00000011405, ENSDARG00000113248 253.77 1902.18 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
70. rps3 ENSDARG00000103007 250.81 1879.99 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
71. rps29 ENSDARG00000041232 246.45 1847.31 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
72. rps27.1 ENSDARG00000023298 241.00 1806.46 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
73. rps15a ENSDARG00000010160 240.53 1802.94 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
74. faua ENSDARG00000099022 237.42 1779.63 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
75. ddx5 ENSDARG00000038068 235.55 1765.61 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
76. rps12 ENSDARG00000036875, ENSDARG00000115157 229.01 1716.59 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
77. seta ENSDARG00000031495 227.61 1706.09 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
78. rplp2l ENSDARG00000011201 226.68 1699.12 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
79. rps5 ENSDARG00000043453 224.81 1685.11 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
80. RPL29 ENSDARG00000077717 215.93 1618.54 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
81. rps6 ENSDARG00000019778 214.84 1610.37 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
82. rpl18 ENSDARG00000029533 212.04 1589.39 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
83. rpl15 ENSDARG00000009285 209.71 1571.92 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
84. rps4x ENSDARG00000014690 202.70 1519.38 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
85. rpl5b ENSDARG00000015862, ENSDARG00000109661 195.70 1466.91 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
86. top1l ENSDARG00000070545 193.83 1452.89 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
87. rpl39 ENSDARG00000036316, ENSDARG00000117167 193.20 1448.17 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
88. rplp0 ENSDARG00000051783 193.20 1448.17 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. tuba8l ENSDARG00000042708 191.65 1436.55 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
90. prtgb ENSDARG00000040442 189.00 1416.69 protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
91. rpl14 ENSDARG00000103433 188.85 1415.56 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
92. pbx4 ENSDARG00000052150 184.33 1381.68 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
93. h3f3b.1 ENSDARG00000020504, ENSDARG00000068434, ENSDARG00000068436 182.46 1367.66 H3 histone, family 3B.1 [Source:ZFIN;Acc:ZDB-GENE-050417-65]
94. rpl7 ENSDARG00000007320 177.95 1333.86 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
95. rps19 ENSDARG00000030602 176.24 1321.04 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
96. calm3a_1 ENSDARG00000015050, ENSDARG00000100825 175.61 1316.32 calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
97. rpl24 ENSDARG00000099104 175.46 1315.19 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
98. ppiab ENSDARG00000103994 174.06 1304.70 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
99. TUBA1A ENSDARG00000001889 171.72 1287.16 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
100. ptmaa ENSDARG00000021113, ENSDARG00000110479 171.25 1283.64 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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