Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s11.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 10939.35 81996.91
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1856.03 13912.04 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1750.59 13121.71
4. hmga1a ENSDARG00000028335 1523.10 11416.54 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. mt-nd2 ENSDARG00000063899 1143.84 8573.76 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-co2 ENSDARG00000063908 1069.72 8018.18 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. eef1a1l1 ENSDARG00000020850 968.43 7258.96 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
8. ppiaa ENSDARG00000009212 941.91 7060.17 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. si:dkey-151g10.6 si:dkey-151g10.6 882.48 6614.71
10. ptmab ENSDARG00000101766 859.48 6442.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
11. tmsb4x ENSDARG00000077777 794.30 5953.75 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
12. mt-atp6 ENSDARG00000063911 786.95 5898.66 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. actb2 ENSDARG00000037870 782.16 5862.75 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. pcna ENSDARG00000054155 748.29 5608.88 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
15. mt-nd4 ENSDARG00000063917 729.76 5469.98 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
16. mt-co3 ENSDARG00000063912 704.52 5280.79 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. AL954137.2 ENSDARG00000114408 629.43 4717.95
18. eef2b ENSDARG00000100371, ENSDARG00000109247 609.62 4569.46 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. hmgn2 ENSDARG00000099572 587.58 4404.26 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 572.24 4289.28 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. rpl18a ENSDARG00000025073 553.71 4150.38 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
22. id1 ENSDARG00000040764 549.56 4119.28 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
23. rpl23 ENSDARG00000053457 540.61 4052.19 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
24. mt-nd1 ENSDARG00000063895 537.09 4025.81 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 535.82 4016.29 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. hsp90ab1 ENSDARG00000029150 509.62 3819.90 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
27. zgc:123194 zgc:123194 490.45 3676.21
28. rpl8 ENSDARG00000014867 484.70 3633.11 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
29. actb1 ENSDARG00000037746, ENSDARG00000113649 478.62 3587.54 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
30. rps27a ENSDARG00000032725, ENSDARG00000114059 447.31 3352.85 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
31. cirbp cirbp 434.85 3259.46
32. rpl26 ENSDARG00000102317 425.27 3187.65 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 423.03 3170.86 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. rplp1 ENSDARG00000021864 422.71 3168.46 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
35. ran ENSDARG00000057026 404.18 3029.57 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
36. rps23 ENSDARG00000021838 397.79 2981.67 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
37. rpl36a ENSDARG00000058105, ENSDARG00000112656 382.13 2864.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
38. rpl9 ENSDARG00000037350, ENSDARG00000112384 377.34 2828.39 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
39. btf3 ENSDARG00000035400, ENSDARG00000116462 374.46 2806.80 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
40. mt-cyb ENSDARG00000063924 367.75 2756.50 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. fabp3 ENSDARG00000023290 339.96 2548.20 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
42. h3f3a 336.12 2519.42 H3 histone, family 3A, transcript variant X1
43. khdrbs1a ENSDARG00000052856 331.97 2488.31 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
44. cfl1 ENSDARG00000021124 330.37 2476.32 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
45. hnrnpab hnrnpab 326.22 2445.21
46. rpl27 ENSDARG00000015128 324.94 2435.62 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
47. rps14 ENSDARG00000036629 314.08 2354.22 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
48. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 312.16 2339.82 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
49. eif5a ENSDARG00000017235 310.24 2325.43 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
50. rps2 ENSDARG00000077291 310.24 2325.43 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
51. rpl19 ENSDARG00000013307 306.09 2294.33 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
52. rps26l ENSDARG00000030408 302.26 2265.62 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. eif5a2 ENSDARG00000056186 295.55 2215.32 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
54. pabpc1a ENSDARG00000017219 295.23 2212.92 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
55. mt-co1 ENSDARG00000063905 291.39 2184.14 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
56. rpl11 ENSDARG00000043509 290.43 2176.94 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
57. rpsa ENSDARG00000019181 288.20 2160.23 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
58. rpl36 ENSDARG00000100588 284.36 2131.45 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
59. marcksb ENSDARG00000008803 279.57 2095.54 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
60. rps15 ENSDARG00000070849, ENSDARG00000110979 277.65 2081.15 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
61. tuba8l4 ENSDARG00000006260 272.86 2045.25 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
62. rpl18 ENSDARG00000029533 260.72 1954.25 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
63. rplp0 ENSDARG00000051783 257.52 1930.26 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
64. rps20 ENSDARG00000036044 252.41 1891.96 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. rpl15 ENSDARG00000009285 251.13 1882.37 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
66. rpl7 ENSDARG00000007320 250.18 1875.25 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
67. rps9 ENSDARG00000011405, ENSDARG00000113248 247.94 1858.46 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
68. rps15a ENSDARG00000010160 243.15 1822.55 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. zgc:92533 zgc:92533 242.19 1815.36
70. rps27.1 ENSDARG00000023298 241.23 1808.16 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
71. rps12 ENSDARG00000036875, ENSDARG00000115157 240.27 1800.97 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
72. fkbp1aa ENSDARG00000022684 239.95 1798.57 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
73. rpl5b ENSDARG00000015862, ENSDARG00000109661 236.76 1774.66 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
74. rplp2l ENSDARG00000011201 236.76 1774.66 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
75. RPL29 ENSDARG00000077717 235.80 1767.46 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
76. rps6 ENSDARG00000019778 233.24 1748.27 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
77. rpl6 ENSDARG00000058451 232.60 1743.47 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
78. faua ENSDARG00000099022 230.37 1726.76 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
79. rps19 ENSDARG00000030602 228.45 1712.37 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
80. si:dkeyp-86f7.3 si:dkeyp-86f7.3 228.13 1709.97
81. seta ENSDARG00000031495 224.61 1683.58 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
82. gch2 ENSDARG00000099101 221.10 1657.28 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
83. tuba8l ENSDARG00000042708 218.86 1640.49 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
84. zgc:56493 ENSDARG00000031435 217.91 1633.36 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
85. rps4x ENSDARG00000014690 215.03 1611.78 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. si:ch1073-429i10.3 208.64 1563.88 si:ch1073-429i10.3, transcript variant X2
87. rps3 ENSDARG00000103007 206.40 1547.09 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
88. ddx5 ENSDARG00000038068 201.93 1513.58 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
89. top1l ENSDARG00000070545 199.05 1492.00 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
90. rpl14 ENSDARG00000103433 198.42 1487.28 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
91. rps10 ENSDARG00000034897 197.14 1477.68 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
92. hnrnpa0a ENSDARG00000089302 193.94 1453.70 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
93. rps29 ENSDARG00000041232 193.30 1448.90 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
94. rps5 ENSDARG00000043453 192.66 1444.10 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
95. ccnd1 ENSDARG00000101637 191.71 1436.98 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
96. rps24 ENSDARG00000039347 189.79 1422.59 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
97. pbx4 ENSDARG00000052150 186.27 1396.20 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
98. gnb2l1 184.04 1379.49 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
99. pnrc2 ENSDARG00000053291, ENSDARG00000112537 179.24 1343.51 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
100. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 178.93 1341.19 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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