Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole2, section s10.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 8945.68 67061.49
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2811.76 21078.42 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1696.92 12721.00
4. mt-co2 ENSDARG00000063908 1336.20 10016.85 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. hmga1a ENSDARG00000028335 1254.20 9402.14 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
6. tmsb4x ENSDARG00000077777 1111.97 8335.91 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
7. mt-nd2 ENSDARG00000063899 1016.78 7622.31 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. ppiaa ENSDARG00000009212 985.23 7385.80 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. mt-nd4 ENSDARG00000063917 969.18 7265.48 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. eef1a1l1 ENSDARG00000020850 967.46 7252.59 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-atp6 ENSDARG00000063911 914.12 6852.72 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. si:dkey-151g10.6 si:dkey-151g10.6 908.96 6814.04
13. ptmab ENSDARG00000101766 816.63 6121.89 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
14. mt-co3 ENSDARG00000063912 729.46 5468.41 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. pcna ENSDARG00000054155 691.04 5180.40 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
16. actb2 ENSDARG00000037870 680.72 5103.03 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. rpl23 ENSDARG00000053457 649.75 4870.87 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
18. hspa8 ENSDARG00000068992, ENSDARG00000114726 601.58 4509.76 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 588.39 4410.88 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 586.09 4393.64 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. hmgn2 ENSDARG00000099572 568.89 4264.70 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
22. mt-nd1 ENSDARG00000063895 568.89 4264.70 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
23. AL954137.2 ENSDARG00000114408 548.82 4114.24
24. rpl8 ENSDARG00000014867 537.92 4032.53 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
25. id1 ENSDARG00000040764 520.14 3899.24 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
26. hsp90ab1 ENSDARG00000029150 510.97 3830.50 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
27. rps26l ENSDARG00000030408 493.19 3697.21 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
28. zgc:123194 zgc:123194 450.18 3374.78
29. rpl18a ENSDARG00000025073 440.43 3301.69 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 435.27 3263.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. rps27a ENSDARG00000032725, ENSDARG00000114059 435.27 3263.01 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
32. fabp3 ENSDARG00000023290 434.70 3258.74 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 428.96 3215.71 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. cirbp cirbp 427.81 3207.09
35. rps23 ENSDARG00000021838 424.37 3181.30 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 406.60 3048.09 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. ran ENSDARG00000057026 403.15 3022.22 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
38. rpl26 ENSDARG00000102317 389.39 2919.07 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. h3f3a 383.08 2871.77 H3 histone, family 3A, transcript variant X1
40. rplp1 ENSDARG00000021864 379.07 2841.71 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
41. rpl9 ENSDARG00000037350, ENSDARG00000112384 373.33 2798.68 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
42. mt-cyb ENSDARG00000063924 367.03 2751.45 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
43. zgc:92533 zgc:92533 363.58 2725.59
44. btf3 ENSDARG00000035400, ENSDARG00000116462 341.22 2557.96 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. rps15 ENSDARG00000070849, ENSDARG00000110979 336.06 2519.28 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
46. hnrnpab hnrnpab 335.48 2514.93
47. rpl36 ENSDARG00000100588 334.91 2510.66 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
48. gch2 ENSDARG00000099101 334.34 2506.39 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
49. rpl19 ENSDARG00000013307 330.32 2476.25 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
50. eif5a2 ENSDARG00000056186 324.01 2428.95 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
51. rpl27 ENSDARG00000015128 320.00 2398.89 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
52. rps29 ENSDARG00000041232 313.12 2347.31 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
53. rps14 ENSDARG00000036629 307.38 2304.28 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
54. khdrbs1a ENSDARG00000052856 305.09 2287.11 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
55. RPL29 ENSDARG00000077717 302.22 2265.60 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
56. rps15a ENSDARG00000010160 301.65 2261.33 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
57. eif5a ENSDARG00000017235 301.08 2257.05 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. rps12 ENSDARG00000036875, ENSDARG00000115157 299.36 2244.16 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
59. rps20 ENSDARG00000036044 295.34 2214.02 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
60. rpl11 ENSDARG00000043509 294.77 2209.75 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. marcksb ENSDARG00000008803 291.33 2183.96 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
62. rpl18 ENSDARG00000029533 289.61 2171.07 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
63. cyt1l ENSDARG00000036832 288.46 2162.45 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
64. rplp2l ENSDARG00000011201 287.89 2158.17 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
65. cfl1 ENSDARG00000021124 286.17 2145.28 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
66. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 282.15 2115.14 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
67. pabpc1a ENSDARG00000017219 277.56 2080.73 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
68. rpl6 ENSDARG00000058451 276.99 2076.46 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
69. rps9 ENSDARG00000011405, ENSDARG00000113248 276.99 2076.46 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
70. rps5 ENSDARG00000043453 272.98 2046.40 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
71. rps2 ENSDARG00000077291 270.68 2029.16 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. faua ENSDARG00000099022 268.39 2011.99 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
73. rpsa ENSDARG00000019181 268.39 2011.99 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
74. tuba8l4 ENSDARG00000006260 261.51 1960.42 tubulin, alpha 8 like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-860]
75. rps6 ENSDARG00000019778 258.64 1938.90 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
76. tuba8l ENSDARG00000042708 255.77 1917.39 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
77. seta ENSDARG00000031495 248.89 1865.81 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
78. rpl5b ENSDARG00000015862, ENSDARG00000109661 246.02 1844.29 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
79. rps27.1 ENSDARG00000023298 244.87 1835.67 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. rps4x ENSDARG00000014690 244.87 1835.67 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
81. si:dkeyp-86f7.3 si:dkeyp-86f7.3 239.71 1796.99
82. rps24 ENSDARG00000039347 236.85 1775.55 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
83. rpl15 ENSDARG00000009285 235.70 1766.93 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
84. rplp0 ENSDARG00000051783 235.70 1766.93 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
85. rps19 ENSDARG00000030602 232.83 1745.42 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
86. rpl39 ENSDARG00000036316, ENSDARG00000117167 229.39 1719.63 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
87. ccnd1 ENSDARG00000101637 226.52 1698.11 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
88. mt-co1 ENSDARG00000063905 219.64 1646.54 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
89. rpl7 ENSDARG00000007320 219.07 1642.26 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
90. rps3 ENSDARG00000103007 217.35 1629.37 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
91. top1l ENSDARG00000070545 216.20 1620.75 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
92. fkbp1aa ENSDARG00000022684 205.88 1543.38 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
93. rpl31 ENSDARG00000053365 197.28 1478.91 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
94. rps18 ENSDARG00000100392 197.28 1478.91 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
95. RPL37A RPL37A 196.13 1470.29
96. zgc:113413 zgc:113413 193.26 1448.78
97. si:ch1073-429i10.3 192.69 1444.50 si:ch1073-429i10.3, transcript variant X2
98. ddx5 ENSDARG00000038068 188.67 1414.37 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
99. rpl24 ENSDARG00000099104 188.67 1414.37 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
100. RPS17L RPS17L 187.53 1405.82
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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