Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s9.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25318.48 189803.62
2. zgc:112425 zgc:112425 1696.93 12721.28
3. mt-co2 ENSDARG00000063908 1187.04 8898.82 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
4. hmga1a ENSDARG00000028335 1125.96 8440.92 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. tmsb4x ENSDARG00000077777 1025.24 7685.86 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. krt4 ENSDARG00000017624, ENSDARG00000115790 862.62 6466.75 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
7. mt-nd2 ENSDARG00000063899 830.06 6222.66 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. si:dkey-151g10.6 si:dkey-151g10.6 826.62 6196.88
9. mt-atp6 ENSDARG00000063911 788.60 5911.85 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. ppiaa ENSDARG00000009212 768.17 5758.70 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. actb2 ENSDARG00000037870 761.70 5710.19 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. AL954137.2 ENSDARG00000114408 718.42 5385.74
13. ptmab ENSDARG00000101766 703.25 5272.01 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
14. mt-nd4 ENSDARG00000063917 676.95 5074.85 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. pcna ENSDARG00000054155 638.12 4783.76 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
16. eef1a1l1 ENSDARG00000020850 611.02 4580.60 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 508.27 3810.32 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 478.74 3588.94 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. hspa8 ENSDARG00000068992, ENSDARG00000114726 476.11 3569.23 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
20. hsp90ab1 ENSDARG00000029150 471.26 3532.87 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
21. mt-co3 ENSDARG00000063912 466.00 3493.44 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
22. mt-nd1 ENSDARG00000063895 428.38 3211.41 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
23. rpl23 ENSDARG00000053457 397.23 2977.89 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
24. si:dkeyp-86f7.3 si:dkeyp-86f7.3 392.78 2944.53
25. id1 ENSDARG00000040764 388.74 2914.25 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
26. rpl18a ENSDARG00000025073 366.08 2744.37 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
27. rps26l ENSDARG00000030408 362.24 2715.58 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
28. rpl21 ENSDARG00000010516, ENSDARG00000110263 359.41 2694.37 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
29. cirbp cirbp 357.39 2679.23
30. rpl8 ENSDARG00000014867 354.15 2654.94 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
31. rps14 ENSDARG00000036629 349.90 2623.08 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
32. khdrbs1a ENSDARG00000052856 341.61 2560.93 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
33. rps23 ENSDARG00000021838 333.12 2497.28 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
34. mt-cyb ENSDARG00000063924 331.09 2482.06 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. fabp3 ENSDARG00000023290 324.62 2433.56 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
36. rpl36 ENSDARG00000100588 324.62 2433.56 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
37. hmgn2 ENSDARG00000099572 319.97 2398.70 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
38. pabpc1a ENSDARG00000017219 303.38 2274.33 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
39. zgc:123194 zgc:123194 303.18 2272.83
40. cfl1 ENSDARG00000021124 298.94 2241.05 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
41. rps27a ENSDARG00000032725, ENSDARG00000114059 297.72 2231.90 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
42. actb1 ENSDARG00000037746, ENSDARG00000113649 293.68 2201.61 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 290.64 2178.82 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. ran ENSDARG00000057026 289.83 2172.75 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
45. hnrnpab hnrnpab 281.54 2110.61
46. btf3 ENSDARG00000035400, ENSDARG00000116462 281.14 2107.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
47. h3f3a 280.73 2104.53 H3 histone, family 3A, transcript variant X1
48. rpl11 ENSDARG00000043509 276.89 2075.75 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. rpl36a ENSDARG00000058105, ENSDARG00000112656 276.08 2069.67 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
50. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 273.86 2053.03 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
51. rps15 ENSDARG00000070849, ENSDARG00000110979 268.19 2010.52 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
52. rpl26 ENSDARG00000102317 267.99 2009.03 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
53. eif5a ENSDARG00000017235 256.06 1919.59 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. rpl19 ENSDARG00000013307 253.83 1902.87 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
55. rplp1 ENSDARG00000021864 252.21 1890.73 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. top1l ENSDARG00000070545 251.81 1887.73 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
57. rps5 ENSDARG00000043453 241.09 1807.37 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
58. si:ch1073-429i10.3 227.54 1705.79 si:ch1073-429i10.3, transcript variant X2
59. rpl27 ENSDARG00000015128 218.84 1640.57 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
60. rps2 ENSDARG00000077291 218.23 1635.99 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
61. rpl6 ENSDARG00000058451 216.21 1620.85 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
62. rps27.1 ENSDARG00000023298 215.81 1617.85 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
63. rps15a ENSDARG00000010160 212.57 1593.56 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
64. seta ENSDARG00000031495 212.37 1592.06 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
65. rpl35 ENSDARG00000018334 212.17 1590.56 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
66. rps6 ENSDARG00000019778 211.16 1582.99 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
67. rps20 ENSDARG00000036044 205.69 1541.98 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
68. pbx4 ENSDARG00000052150 203.47 1525.34 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
69. rpl18 ENSDARG00000029533 203.07 1522.34 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
70. hnrnpa0a ENSDARG00000089302 199.43 1495.06 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
71. fkbp1aa ENSDARG00000022684 198.62 1488.98 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
72. rpsa ENSDARG00000019181 193.16 1448.05 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
73. rplp2l ENSDARG00000011201 189.92 1423.76 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
74. eif5a2 ENSDARG00000056186 187.69 1407.05 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
75. rps12 ENSDARG00000036875, ENSDARG00000115157 186.28 1396.47 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
76. rps19 ENSDARG00000030602 185.67 1391.90 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
77. mt-co1 ENSDARG00000063905 185.06 1387.33 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
78. RPL29 ENSDARG00000077717 184.05 1379.76 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 183.24 1373.68 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. h3f3d ENSDARG00000045248 182.23 1366.11 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
81. rps3 ENSDARG00000103007 181.63 1361.62 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
82. marcksl1b ENSDARG00000035715 181.22 1358.54 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
83. pnrc2 ENSDARG00000053291, ENSDARG00000112537 180.82 1355.54 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
84. rps4x ENSDARG00000014690 180.01 1349.47 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
85. rpl7 ENSDARG00000007320 179.60 1346.40 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
86. rpl15 ENSDARG00000009285 176.57 1323.68 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
87. rpl5b ENSDARG00000015862, ENSDARG00000109661 176.57 1323.68 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
88. marcksb ENSDARG00000008803 175.96 1319.11 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
89. rplp0 ENSDARG00000051783 168.28 1261.54 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. tuba8l ENSDARG00000042708 165.65 1241.82 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
91. rpl31 ENSDARG00000053365 164.03 1229.67 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
92. rpl39 ENSDARG00000036316, ENSDARG00000117167 163.22 1223.60 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
93. AC024175.17 AC024175.17 162.21 1216.03
94. ddx5 ENSDARG00000038068 161.40 1209.96 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
95. rps10 ENSDARG00000034897 160.19 1200.89 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
96. rpl24 ENSDARG00000099104 157.76 1182.67 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
97. ppiab ENSDARG00000103994 152.50 1143.24 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
98. rpl14 ENSDARG00000103433 149.27 1119.02 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
99. rpl30 ENSDARG00000035871, ENSDARG00000109253 148.46 1112.95 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
100. rps13 ENSDARG00000036298, ENSDARG00000112818 148.25 1111.38 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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