Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s8.

Sample reads: 133,417. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24937.62 186915.72
2. zgc:112425 zgc:112425 1962.67 14710.86
3. tmsb4x ENSDARG00000077777 1310.09 9819.56 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. hmga1a ENSDARG00000028335 1153.65 8646.99 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. mt-co2 ENSDARG00000063908 1105.90 8289.09 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd2 ENSDARG00000063899 917.70 6878.47 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. krt4 ENSDARG00000017624, ENSDARG00000115790 915.58 6862.58 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
8. actb2 ENSDARG00000037870 830.66 6226.07 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
9. si:dkey-151g10.6 si:dkey-151g10.6 821.72 6159.06
10. mt-atp6 ENSDARG00000063911 790.43 5924.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
11. AL954137.2 ENSDARG00000114408 748.09 5607.18
12. ppiaa ENSDARG00000009212 723.39 5422.05 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
13. ptmab ENSDARG00000101766 705.04 5284.51 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
14. eef1a1l1 ENSDARG00000020850 649.05 4864.84 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. pcna ENSDARG00000054155 601.29 4506.87 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
16. mt-nd4 ENSDARG00000063917 565.53 4238.83 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 535.42 4013.15 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. hsp90ab1 ENSDARG00000029150 495.43 3713.41 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 455.44 3413.67 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. rpl23 ENSDARG00000053457 422.74 3168.58 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
21. rpl18a ENSDARG00000025073 420.39 3150.96 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
22. mt-co3 ENSDARG00000063912 419.21 3142.12 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
23. hspa8 ENSDARG00000068992, ENSDARG00000114726 413.09 3096.25 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
24. khdrbs1a ENSDARG00000052856 404.86 3034.56 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
25. si:dkeyp-86f7.3 si:dkeyp-86f7.3 391.69 2935.85
26. id1 ENSDARG00000040764 390.98 2930.52 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
27. zgc:123194 zgc:123194 362.28 2715.41
28. cfl1 ENSDARG00000021124 355.93 2667.81 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
29. mt-nd1 ENSDARG00000063895 354.52 2657.24 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. cirbp cirbp 348.40 2611.37
31. rpl8 ENSDARG00000014867 342.52 2567.30 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
32. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 338.05 2533.80 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
33. fabp3 ENSDARG00000023290 332.40 2491.45 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
34. rpl21 ENSDARG00000010516, ENSDARG00000110263 326.29 2445.65 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
35. hmgn2 ENSDARG00000099572 322.29 2415.67 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
36. rps23 ENSDARG00000021838 318.05 2383.89 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
37. rpl11 ENSDARG00000043509 298.53 2237.58 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
38. ran ENSDARG00000057026 293.12 2197.03 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
39. rpl36 ENSDARG00000100588 288.41 2161.73 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
40. mt-cyb ENSDARG00000063924 287.47 2154.68 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
41. h3f3a 285.12 2137.07 H3 histone, family 3A, transcript variant X1
42. rpl9 ENSDARG00000037350, ENSDARG00000112384 282.53 2117.66 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
43. rpl26 ENSDARG00000102317 280.65 2103.56 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
44. rps27a ENSDARG00000032725, ENSDARG00000114059 279.00 2091.20 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
45. actb1 ENSDARG00000037746, ENSDARG00000113649 278.06 2084.15 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
46. rps14 ENSDARG00000036629 274.53 2057.69 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
47. rps15 ENSDARG00000070849, ENSDARG00000110979 270.06 2024.19 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
48. hnrnpab hnrnpab 269.36 2018.94
49. top1l ENSDARG00000070545 265.83 1992.48 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
50. pbx4 ENSDARG00000052150 264.42 1981.92 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
51. btf3 ENSDARG00000035400, ENSDARG00000116462 259.48 1944.89 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
52. rps26l ENSDARG00000030408 257.60 1930.80 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. eif5a ENSDARG00000017235 257.36 1929.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. rplp1 ENSDARG00000021864 255.24 1913.11 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
55. rpl36a ENSDARG00000058105, ENSDARG00000112656 245.13 1837.33 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
56. rps2 ENSDARG00000077291 235.72 1766.80 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. marcksb ENSDARG00000008803 234.07 1754.43 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
58. zgc:56493 ENSDARG00000031435 227.95 1708.56 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
59. h3f3d ENSDARG00000045248 224.43 1682.18 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
60. seta ENSDARG00000031495 223.01 1671.53 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
61. rpl19 ENSDARG00000013307 221.13 1657.44 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
62. pabpc1a ENSDARG00000017219 214.31 1606.32 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
63. pnrc2 ENSDARG00000053291, ENSDARG00000112537 212.66 1593.96 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
64. rpl6 ENSDARG00000058451 211.96 1588.71 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
65. rpl35 ENSDARG00000018334 210.31 1576.34 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
66. hnrnpa0a ENSDARG00000089302 209.37 1569.30 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
67. rps20 ENSDARG00000036044 207.72 1556.93 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
68. rps15a ENSDARG00000010160 202.31 1516.38 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. si:ch1073-429i10.3 201.84 1512.86 si:ch1073-429i10.3, transcript variant X2
70. rpl27 ENSDARG00000015128 197.14 1477.63 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
71. rpsa ENSDARG00000019181 193.61 1451.17 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
72. rps4x ENSDARG00000014690 191.02 1431.76 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
73. rps5 ENSDARG00000043453 182.55 1368.27 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
74. RPL29 ENSDARG00000077717 180.67 1354.18 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
75. rps6 ENSDARG00000019778 180.43 1352.38 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
76. AC024175.17 AC024175.17 179.96 1348.86
77. eif5a2 ENSDARG00000056186 178.08 1334.77 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
78. rpl18 ENSDARG00000029533 177.85 1333.04 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
79. rplp2l ENSDARG00000011201 176.91 1326.00 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
80. fkbp1aa ENSDARG00000022684 175.49 1315.36 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
81. ppiab ENSDARG00000103994 175.26 1313.63 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
82. rps27.1 ENSDARG00000023298 173.85 1303.06 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
83. calm2a ENSDARG00000031427, ENSDARG00000111871 173.61 1301.26 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
84. ddx5 ENSDARG00000038068 172.67 1294.22 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
85. tuba8l ENSDARG00000042708 172.67 1294.22 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
86. rps10 ENSDARG00000034897 171.50 1285.45 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
87. rps12 ENSDARG00000036875, ENSDARG00000115157 170.08 1274.81 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
88. rpl15 ENSDARG00000009285 167.73 1257.19 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
89. marcksl1b ENSDARG00000035715 167.03 1251.95 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
90. rps19 ENSDARG00000030602 166.79 1250.15 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
91. faua ENSDARG00000099022 165.38 1239.58 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. prtgb ENSDARG00000040442 161.61 1211.32 protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
93. ccnd1 ENSDARG00000101637 157.85 1183.14 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
94. rps3 ENSDARG00000103007 155.03 1162.00 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
95. rps9 ENSDARG00000011405, ENSDARG00000113248 151.50 1135.54 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
96. rplp0 ENSDARG00000051783 150.79 1130.22 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. RPL37A RPL37A 148.44 1112.61
98. rpl7 ENSDARG00000007320 143.74 1077.38 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
99. rpl5b ENSDARG00000015862, ENSDARG00000109661 142.56 1068.53 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
100. ptmaa ENSDARG00000021113, ENSDARG00000110479 142.32 1066.74 prothymosin alpha a [Source:ZFIN;Acc:ZDB-GENE-030131-7647]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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