Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s7.

Sample reads: 133,406. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13602.46 101962.55
2. zgc:112425 zgc:112425 2075.13 15554.95
3. tmsb4x ENSDARG00000077777 2022.14 15157.74 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1549.54 11615.18 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. hmga1a ENSDARG00000028335 1426.38 10691.99 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
6. mt-co2 ENSDARG00000063908 1249.09 9363.04 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. ptmab ENSDARG00000101766 996.46 7469.36 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
8. ppiaa ENSDARG00000009212 968.11 7256.85 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
9. si:dkey-151g10.6 si:dkey-151g10.6 919.99 6896.14
10. pcna ENSDARG00000054155 890.49 6675.02 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
11. actb2 ENSDARG00000037870 879.03 6589.11 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. mt-atp6 ENSDARG00000063911 861.27 6455.99 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-nd2 ENSDARG00000063899 829.48 6217.69 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
14. mt-nd4 ENSDARG00000063917 810.57 6075.94 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
15. eef1a1l1 ENSDARG00000020850 746.42 5595.08 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. AL954137.2 ENSDARG00000114408 645.59 4839.27
17. id1 ENSDARG00000040764 641.01 4804.94 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
18. rpl10a ENSDARG00000042905, ENSDARG00000115649 603.78 4525.87 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
19. mt-co3 ENSDARG00000063912 559.38 4193.05 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
20. fabp3 ENSDARG00000023290 553.65 4150.10 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
21. rpl23 ENSDARG00000053457 530.74 3978.37 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. hmgn2 ENSDARG00000099572 525.58 3939.69 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
23. hsp90ab1 ENSDARG00000029150 524.44 3931.14 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
24. zgc:123194 zgc:123194 479.47 3594.05
25. hspa8 ENSDARG00000068992, ENSDARG00000114726 476.89 3574.72 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
26. eef2b ENSDARG00000100371, ENSDARG00000109247 474.31 3555.38 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
27. si:dkeyp-86f7.3 si:dkeyp-86f7.3 449.68 3370.75
28. cirbp cirbp 447.68 3355.76
29. mt-nd1 ENSDARG00000063895 446.25 3345.04 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
30. rpl21 ENSDARG00000010516, ENSDARG00000110263 438.23 3284.92 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
31. rps23 ENSDARG00000021838 427.05 3201.12 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
32. rps26l ENSDARG00000030408 423.04 3171.06 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
33. rpl18a ENSDARG00000025073 422.76 3168.96 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
34. rpl36 ENSDARG00000100588 421.90 3162.52 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
35. rpl8 ENSDARG00000014867 421.33 3158.24 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. ran ENSDARG00000057026 392.40 2941.39 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
37. rps15 ENSDARG00000070849, ENSDARG00000110979 388.10 2909.16 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
38. mt-cyb ENSDARG00000063924 387.82 2907.06 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 385.81 2891.99 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 379.51 2844.77 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
41. rplp1 ENSDARG00000021864 379.51 2844.77 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
42. h3f3a 375.21 2812.53 H3 histone, family 3A, transcript variant X1
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 365.19 2737.42 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. rps14 ENSDARG00000036629 357.17 2677.31 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
45. khdrbs1a ENSDARG00000052856 345.14 2587.13 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
46. rpl26 ENSDARG00000102317 341.70 2561.35 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 331.39 2484.06 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. RPL29 ENSDARG00000077717 321.65 2411.05 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
49. cfl1 ENSDARG00000021124 317.36 2378.90 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
50. h3f3d ENSDARG00000045248 309.05 2316.60 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
51. rps27a ENSDARG00000032725, ENSDARG00000114059 302.17 2265.03 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
52. rps20 ENSDARG00000036044 301.60 2260.76 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
53. hnrnpab hnrnpab 300.74 2254.31
54. seta ENSDARG00000031495 300.74 2254.31 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
55. rpl19 ENSDARG00000013307 299.88 2247.87 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
56. rpl36a ENSDARG00000058105, ENSDARG00000112656 299.02 2241.42 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
57. rpl11 ENSDARG00000043509 295.59 2215.71 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. top1l ENSDARG00000070545 294.73 2209.26 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
59. rps5 ENSDARG00000043453 288.43 2162.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
60. marcksb ENSDARG00000008803 282.70 2119.09 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
61. rpl35 ENSDARG00000018334 282.13 2114.82 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
62. rps15a ENSDARG00000010160 278.12 2084.76 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
63. rps6 ENSDARG00000019778 276.97 2076.14 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
64. si:ch1073-429i10.3 275.82 2067.52 si:ch1073-429i10.3, transcript variant X2
65. eif5a ENSDARG00000017235 272.10 2039.63 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. tuba8l ENSDARG00000042708 265.23 1988.14 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
67. rpl27 ENSDARG00000015128 254.63 1908.68 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. rpl6 ENSDARG00000058451 252.05 1889.34 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
69. anp32a ENSDARG00000006487 251.76 1887.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A [Source:ZFIN;Acc:ZDB-GENE-030131-7850]
70. rpl18 ENSDARG00000029533 251.76 1887.17 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
71. pabpc1a ENSDARG00000017219 244.03 1829.22 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
72. fkbp1aa ENSDARG00000022684 243.17 1822.78 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
73. rplp2l ENSDARG00000011201 238.02 1784.17 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
74. rpl7 ENSDARG00000007320 236.58 1773.38 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
75. rps2 ENSDARG00000077291 233.72 1751.94 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. ddx5 ENSDARG00000038068 227.99 1708.99 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
77. rpl39 ENSDARG00000036316, ENSDARG00000117167 225.70 1691.82 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
78. rps27.1 ENSDARG00000023298 225.70 1691.82 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 224.84 1685.38 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. rps19 ENSDARG00000030602 220.54 1653.14 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
81. ppiab ENSDARG00000103994 217.68 1631.71 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
82. rpsa ENSDARG00000019181 216.53 1623.09 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. RPL37A RPL37A 213.38 1599.47
84. rps3 ENSDARG00000103007 212.52 1593.03 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
85. hnrnpa0a ENSDARG00000089302 212.24 1590.93 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
86. rps12 ENSDARG00000036875, ENSDARG00000115157 210.81 1580.21 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
87. pnrc2 ENSDARG00000053291, ENSDARG00000112537 209.66 1571.59 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
88. rps4x ENSDARG00000014690 205.08 1537.26 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
89. faua ENSDARG00000099022 204.22 1530.81 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. rpl15 ENSDARG00000009285 203.93 1528.64 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
91. rps24 ENSDARG00000039347 199.92 1498.58 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
92. eif5a2 ENSDARG00000056186 198.49 1487.86 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
93. prtgb ENSDARG00000040442 197.63 1481.41 protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
94. rps29 ENSDARG00000041232 192.76 1444.91 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
95. rpl24 ENSDARG00000099104 190.47 1427.74 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
96. rplp0 ENSDARG00000051783 187.03 1401.96 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. marcksl1b ENSDARG00000035715 186.75 1399.86 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
98. pbx4 ENSDARG00000052150 184.17 1380.52 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
99. rpl23a ENSDARG00000006316 183.88 1378.34 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
100. rpl31 ENSDARG00000053365 183.88 1378.34 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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