Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s61.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23954.04 179567.04
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3988.25 29897.18 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoc1l apoc1l 2298.15 17227.66
4. tmsb4x ENSDARG00000077777 1810.95 13575.45 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. si:dkey-151g10.6 si:dkey-151g10.6 1027.28 7700.81
6. mt-co2 ENSDARG00000063908 1021.61 7658.31 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 889.42 6667.37 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mt-atp6 ENSDARG00000063911 881.87 6610.78 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. eef1a1l1 ENSDARG00000020850 870.54 6525.84 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
10. mt-nd2 ENSDARG00000063899 862.99 6469.25 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
11. actb2 ENSDARG00000037870 845.99 6341.81 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
12. ppiaa ENSDARG00000009212 825.22 6186.11 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
13. zgc:112425 zgc:112425 802.56 6016.24
14. hmga1a ENSDARG00000028335 719.47 5393.37 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
15. rpl10a ENSDARG00000042905, ENSDARG00000115649 676.04 5067.81 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
16. actb1 ENSDARG00000037746, ENSDARG00000113649 606.17 4544.04 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
17. mt-co3 ENSDARG00000063912 594.84 4459.11 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. rpl23 ENSDARG00000053457 587.28 4402.44 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
19. pcna ENSDARG00000054155 547.63 4105.21 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
20. ptmab ENSDARG00000101766 526.86 3949.51 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
21. rpl21 ENSDARG00000010516, ENSDARG00000110263 507.97 3807.90 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
22. id1 ENSDARG00000040764 506.08 3793.74 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
23. rpl8 ENSDARG00000014867 479.65 3595.61 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. efemp2a ENSDARG00000094324 473.98 3553.10 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
25. rpl18a ENSDARG00000025073 456.99 3425.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. eef2b ENSDARG00000100371, ENSDARG00000109247 436.21 3269.97 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
27. apoeb ENSDARG00000040295 432.44 3241.71 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
28. rps23 ENSDARG00000021838 417.33 3128.44 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 406.00 3043.50 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. rps14 ENSDARG00000036629 402.22 3015.17 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
31. rpl26 ENSDARG00000102317 398.45 2986.91 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
32. mt-nd1 ENSDARG00000063895 396.56 2972.74 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
33. hsp90ab1 ENSDARG00000029150 387.12 2901.97 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
34. mt-cyb ENSDARG00000063924 385.23 2887.81 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
35. col1a1a ENSDARG00000012405, ENSDARG00000116113 381.45 2859.47 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 381.45 2859.47 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. rps26l ENSDARG00000030408 379.56 2845.30 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
38. rpl36 ENSDARG00000100588 368.23 2760.37 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
39. rps2 ENSDARG00000077291 364.46 2732.11 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
40. krt8 ENSDARG00000058358, ENSDARG00000109279 362.57 2717.94 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 353.13 2647.17 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. rpl36a ENSDARG00000058105, ENSDARG00000112656 353.13 2647.17 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
43. rpl11 ENSDARG00000043509 351.24 2633.01 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
44. rps27a ENSDARG00000032725, ENSDARG00000114059 349.35 2618.84 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
45. rps6 ENSDARG00000019778 334.24 2505.57 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
46. rpl27 ENSDARG00000015128 322.91 2420.64 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
47. rpl19 ENSDARG00000013307 321.02 2406.47 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
48. si:dkeyp-86f7.3 si:dkeyp-86f7.3 321.02 2406.47
49. zgc:92533 zgc:92533 317.25 2378.21
50. rplp1 ENSDARG00000021864 307.81 2307.44 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
51. rps4x ENSDARG00000014690 307.81 2307.44 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
52. AL954137.2 ENSDARG00000114408 300.25 2250.77
53. rps19 ENSDARG00000030602 298.36 2236.60 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
54. rps10 ENSDARG00000034897 294.59 2208.34 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
55. cfl1l ENSDARG00000012972 292.70 2194.17 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
56. cyt1l ENSDARG00000036832 292.70 2194.17 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
57. rpl18 ENSDARG00000029533 292.70 2194.17 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
58. rpl6 ENSDARG00000058451 290.81 2180.00 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
59. rps15a ENSDARG00000010160 285.14 2137.50 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
60. rps5 ENSDARG00000043453 271.93 2038.47 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
61. rps15 ENSDARG00000070849, ENSDARG00000110979 270.04 2024.31 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
62. rpl7 ENSDARG00000007320 260.60 1953.54 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
63. cirbp cirbp 253.04 1896.87
64. RPL29 ENSDARG00000077717 249.27 1868.61 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
65. rpl5b ENSDARG00000015862, ENSDARG00000109661 249.27 1868.61 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
66. eif5a ENSDARG00000017235 247.38 1854.44 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
67. rps9 ENSDARG00000011405, ENSDARG00000113248 239.82 1797.77 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
68. rplp0 ENSDARG00000051783 236.05 1769.51 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
69. rpl15 ENSDARG00000009285 234.16 1755.34 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
70. rps12 ENSDARG00000036875, ENSDARG00000115157 234.16 1755.34 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
71. rpl35 ENSDARG00000018334 230.38 1727.00 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
72. rps27.1 ENSDARG00000023298 230.38 1727.00 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
73. fkbp1aa ENSDARG00000022684 219.05 1642.07 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
74. rpsa ENSDARG00000019181 219.05 1642.07 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
75. rpl28 ENSDARG00000005791 213.39 1599.64 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
76. zgc:92061 zgc:92061 211.50 1585.47
77. si:ch1073-429i10.3 207.72 1557.13 si:ch1073-429i10.3, transcript variant X2
78. ran ENSDARG00000057026 203.94 1528.80 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
79. rpl14 ENSDARG00000103433 202.06 1514.71 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
80. rps20 ENSDARG00000036044 202.06 1514.71 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
81. si:dkey-150i13.2 ENSDARG00000071052 202.06 1514.71 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
82. h3f3a 200.17 1500.54 H3 histone, family 3A, transcript variant X1
83. rps3 ENSDARG00000103007 200.17 1500.54 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
84. pfn1 ENSDARG00000088091 198.28 1486.37 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
85. rpl17 ENSDARG00000057556 198.28 1486.37 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
86. zgc:123194 zgc:123194 198.28 1486.37
87. faua ENSDARG00000099022 196.39 1472.20 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
88. pabpc1a ENSDARG00000017219 196.39 1472.20 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
89. rplp2l ENSDARG00000011201 194.50 1458.03 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
90. RPL37A RPL37A 190.73 1429.77
91. rps24 ENSDARG00000039347 190.73 1429.77 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
92. bcam ENSDARG00000090190 188.84 1415.60 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
93. rps27.2 ENSDARG00000055475 183.17 1373.10 ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
94. hmgn2 ENSDARG00000099572 179.40 1344.84 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
95. rps7 ENSDARG00000042566 177.51 1330.67 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
96. rpl30 ENSDARG00000035871, ENSDARG00000109253 175.62 1316.50 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
97. rpl39 ENSDARG00000036316, ENSDARG00000117167 175.62 1316.50 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
98. atp5g1 171.84 1288.17 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)
99. rpl23a ENSDARG00000006316 169.95 1274.00 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
100. rps25 ENSDARG00000041811 169.95 1274.00 ribosomal protein S25 [Source:ZFIN;Acc:ZDB-GENE-040426-1788]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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