Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s6.

Sample reads: 133,407. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20434.70 153177.38
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3478.38 26073.74 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. zgc:112425 zgc:112425 1906.32 14289.67
4. hmga1a ENSDARG00000028335 1360.73 10199.96 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
5. tmsb4x ENSDARG00000077777 1217.33 9125.04 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. pcna ENSDARG00000054155 948.85 7112.53 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
7. actb2 ENSDARG00000037870 916.50 6870.03 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. mt-co2 ENSDARG00000063908 855.04 6409.33 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. ptmab ENSDARG00000101766 825.93 6191.13 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
10. ppiaa ENSDARG00000009212 823.77 6174.93 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. mt-nd2 ENSDARG00000063899 774.17 5803.14 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
12. mt-atp6 ENSDARG00000063911 700.85 5253.53 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. mt-nd4 ENSDARG00000063917 684.68 5132.32 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
14. si:dkey-151g10.6 si:dkey-151g10.6 681.44 5108.04
15. eef1a1l1 ENSDARG00000020850 649.10 4865.62 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. fabp3 ENSDARG00000023290 595.19 4461.51 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
17. id1 ENSDARG00000040764 562.84 4219.02 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
18. AL954137.2 ENSDARG00000114408 559.60 4194.73
19. rpl10a ENSDARG00000042905, ENSDARG00000115649 545.59 4089.71 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
20. actb1 ENSDARG00000037746, ENSDARG00000113649 508.93 3814.91 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
21. hmgn2 ENSDARG00000099572 484.13 3629.01 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
22. mt-co3 ENSDARG00000063912 466.88 3499.71 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
23. hsp90ab1 ENSDARG00000029150 439.92 3297.62 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
24. hspa8 ENSDARG00000068992, ENSDARG00000114726 434.53 3257.21 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
25. rpl8 ENSDARG00000014867 424.82 3184.43 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
26. zgc:123194 zgc:123194 418.35 3135.93
27. rpl18a ENSDARG00000025073 378.46 2836.92 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
28. eef2b ENSDARG00000100371, ENSDARG00000109247 367.68 2756.11 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
29. h3f3a 363.36 2723.73 H3 histone, family 3A, transcript variant X1
30. btf3 ENSDARG00000035400, ENSDARG00000116462 360.13 2699.51 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 360.13 2699.51 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. rpl23 ENSDARG00000053457 356.90 2675.30 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. khdrbs1a ENSDARG00000052856 354.74 2659.11 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
34. rps23 ENSDARG00000021838 346.11 2594.42 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
35. AC024175.17 AC024175.17 336.41 2521.71
36. mt-cyb ENSDARG00000063924 336.41 2521.71 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
37. si:dkeyp-86f7.3 si:dkeyp-86f7.3 335.33 2513.62
38. zgc:92533 zgc:92533 335.33 2513.62
39. rps14 ENSDARG00000036629 334.25 2505.52 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
40. mt-nd1 ENSDARG00000063895 332.10 2489.40 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
41. hnrnpab hnrnpab 324.55 2432.81
42. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 322.39 2416.62 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 322.39 2416.62 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. ran ENSDARG00000057026 319.16 2392.41 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
45. cirbp cirbp 318.08 2384.31
46. rplp1 ENSDARG00000021864 318.08 2384.31 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
47. rpl26 ENSDARG00000102317 310.53 2327.72 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
48. rpl36 ENSDARG00000100588 298.67 2238.81 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
49. cfl1 ENSDARG00000021124 292.20 2190.31 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
50. pabpc1a ENSDARG00000017219 290.05 2174.20 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
51. rps26l ENSDARG00000030408 290.05 2174.20 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
52. rpl11 ENSDARG00000043509 281.42 2109.51 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 281.42 2109.51 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. rpl36a ENSDARG00000058105, ENSDARG00000112656 276.03 2069.11 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
55. rps2 ENSDARG00000077291 269.56 2020.61 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
56. seta ENSDARG00000031495 269.56 2020.61 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
57. rpl19 ENSDARG00000013307 268.48 2012.51 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
58. rpl27 ENSDARG00000015128 265.25 1988.30 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
59. rps6 ENSDARG00000019778 260.93 1955.92 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
60. rps15 ENSDARG00000070849, ENSDARG00000110979 258.78 1939.80 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
61. si:ch1073-429i10.3 250.15 1875.11 si:ch1073-429i10.3, transcript variant X2
62. rpl6 ENSDARG00000058451 249.07 1867.01 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
63. cyt1l ENSDARG00000036832 243.68 1826.61 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
64. top1l ENSDARG00000070545 243.68 1826.61 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
65. rpl7 ENSDARG00000007320 242.60 1818.52 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
66. h3f3d ENSDARG00000045248 239.37 1794.30 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
67. fkbp1aa ENSDARG00000022684 236.13 1770.02 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
68. rps19 ENSDARG00000030602 225.35 1689.21 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
69. ppiab ENSDARG00000103994 224.27 1681.12 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
70. tuba8l ENSDARG00000042708 224.27 1681.12 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
71. eif5a ENSDARG00000017235 222.12 1665.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
72. rps15a ENSDARG00000010160 219.96 1648.81 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
73. pnrc2 ENSDARG00000053291, ENSDARG00000112537 218.88 1640.71 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
74. marcksb ENSDARG00000008803 214.57 1608.40 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
75. rps4x ENSDARG00000014690 214.57 1608.40 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
76. RPL29 ENSDARG00000077717 208.10 1559.91 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
77. rpl18 ENSDARG00000029533 207.02 1551.81 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. rpl35 ENSDARG00000018334 203.79 1527.60 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
79. pbx4 ENSDARG00000052150 202.71 1519.50 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
80. rps9 ENSDARG00000011405, ENSDARG00000113248 198.40 1487.20 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
81. rps3 ENSDARG00000103007 195.16 1462.91 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
82. hnrnpa0a ENSDARG00000089302 194.08 1454.81 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
83. marcksl1b ENSDARG00000035715 193.00 1446.72 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
84. rps20 ENSDARG00000036044 193.00 1446.72 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
85. lfng ENSDARG00000037879 191.93 1438.70 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
86. rplp2l ENSDARG00000011201 189.77 1422.51 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
87. rpl5b ENSDARG00000015862, ENSDARG00000109661 188.69 1414.41 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
88. rpsa ENSDARG00000019181 184.38 1382.10 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
89. mdka ENSDARG00000036036 183.30 1374.01 midkine a [Source:ZFIN;Acc:ZDB-GENE-990621-1]
90. rps27.1 ENSDARG00000023298 183.30 1374.01 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. rpl15 ENSDARG00000009285 181.14 1357.82 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
92. faua ENSDARG00000099022 177.91 1333.60 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
93. ddx5 ENSDARG00000038068 174.67 1309.32 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
94. ccnd1 ENSDARG00000101637 173.60 1301.30 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
95. mt-co1 ENSDARG00000063905 173.60 1301.30 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
96. zgc:165571 zgc:165571 172.52 1293.20
97. stmn1a ENSDARG00000004169 169.28 1268.91 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
98. zgc:113413 zgc:113413 163.89 1228.51
99. rpl24 ENSDARG00000099104 162.81 1220.41 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
100. prtgb ENSDARG00000040442 161.74 1212.39 protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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